prot_H-elongata_contig97200.17088.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97200.17088.1
Unique Nameprot_H-elongata_contig97200.17088.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length127
Homology
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 125 bits (314), Expect = 7.330e-31
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 0
Query:    2 GVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTEEY 126
            GVQQGCNLG LC+SAG L LL+ FR NPPV GA +  F+DD+ +LL      +  A    TTW+Q   + +G+ LNR+KS++L   G    + P + R  LE  +L+V EGGMR++GVPVG  +Y
Sbjct: 1350 GVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDY 1474          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.930e-28
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    1 RGVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTE 124
            RGVQQGCNLGG  FS G L  ++ F D PPV GA +  +VDD+ + L P   ++ +AIA  T W+Q      GIEL+  KS+VL   G   ++L  +++R L +  LSV EGGM ++GVPVGTE
Sbjct:   13 RGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTE 136          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.430e-26
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    1 RGVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTEEY 126
            RGVQQGCNLGG  F  G L +++ F + PPV G  +  +VDD+   L P   ++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L  ++++ L +I LSV EGGM V+G+PVGTEE+
Sbjct:  314 RGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEF 439          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.460e-26
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    1 RGVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTEEY 126
            RGVQQGCNLGG  F  G L +++ F + PPV G  +  +VDD+   L P   ++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L  ++++ L +I LSV EGGM V+G+PVGTEE+
Sbjct:  314 RGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEF 439          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.470e-26
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    1 RGVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTEEY 126
            RGVQQGCNLGG  F  G L +++ F + PPV G  +  +VDD+   L P   ++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L  ++++ L +I LSV EGGM V+G+PVGTEE+
Sbjct:  162 RGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEF 287          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.310e-26
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    1 RGVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTE 124
            RGVQQGCNLGG  F  G L +++ F + PPV GA +  +VDD+ + L P   ++ +AIA  T W+Q      GIEL+  KS VL   G   ++L  +++R L +  LSV EGGM ++GVPVGTE
Sbjct:  162 RGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTE 285          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.040e-26
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    1 RGVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTE 124
            RGVQQGCNLGG  F  G L +++ F + PPV GA +  +VDD+ + L P   ++ +AIA  T W+Q      GIEL+  KS+VL   G   ++L  +++R L +  LSV EGGM ++GVPVGTE
Sbjct:  314 RGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTE 437          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5KDI2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.500e-17
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   22 LQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTEEY 126
            ++ F + PPV G  +  +VDD+   L P   ++ +AI+  T W+Q+ +   GIELN  KS+VL   G   ++L  ++++ L +I LSV EGGM V+ +PVGTEE+
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQESRSQKGIELNLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVAIPVGTEEF 105          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.870e-17
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   22 LQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTEEY 126
            ++ F + PPV G  +  +VDD+   L P   ++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L  ++++ L +I LSV EGGM V+G+P GTEE+
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEF 105          
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.870e-17
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   22 LQRFRDNPPVEGASIFCFVDDINILLLPAKVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRRILEEIELSVVEGGMRVLGVPVGTEEY 126
            ++ F + PPV G  +  +VDD+   L P   ++ +AI+  T W+Q+     GIEL+  KS+VL   G   ++L  ++++ L +I LSV EGGM V+G+PVGTEE+
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEF 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97200.17088.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN7.330e-3148.00Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5K541_9PHAE2.930e-2847.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE1.430e-2644.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE1.460e-2644.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE1.470e-2644.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE5.310e-2645.97Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE6.040e-2645.97Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI2_9PHAE1.500e-1740.00Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JLD7_9PHAE2.870e-1739.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ7_9PHAE2.870e-1740.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 1..120
e-value: 3.4E-7
score: 30.0
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..121
score: 8.937

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97200contigH-elongata_contig97200:1791..2171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97200.17088.1mRNA_H-elongata_contig97200.17088.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97200 1791..2171 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97200.17088.1 ID=prot_H-elongata_contig97200.17088.1|Name=mRNA_H-elongata_contig97200.17088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
RGVQQGCNLGGLCFSAGGLSLLQRFRDNPPVEGASIFCFVDDINILLLPA
KVQDAEAIAKATTWVQKEQEAIGIELNRAKSQVLLAGGASAATLPAEQRR
ILEEIELSVVEGGMRVLGVPVGTEEY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom