prot_H-elongata_contig9626.17021.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9626.17021.1
Unique Nameprot_H-elongata_contig9626.17021.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length164
Homology
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BLAST of mRNA_H-elongata_contig9626.17021.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.660e-15
Identity = 53/145 (36.55%), Postives = 73/145 (50.34%), Query Frame = 0 
Query:   33 AVPCSNKTELIVVGTTLEAESLTDALLCEGTGRFEVHWLGEVVLSRPVFVSNGTTLNLTGFSTDDADEASAGGAVISGDNTDHLLHVDYGSSVLLTDLT-------------FSNGNRALEFFEESYAEVKDCIFFNNASSSSGG 164
            A  CS   +  VV TT EA  L++ALLC G G FEV W GEV+L RP+F+SNG+ + +TG        ASAG AVI G +   L +V+ GS++ L  L+             +  G   +   ++       C F  N +  SGG
Sbjct:   21 AATCSVAVDARVVSTTEEASELSEALLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVTG--------ASAGEAVIDGGDAVVLFNVNDGSTLELDALSLVRGVATYTATYSYGGGGAVILRSDDCILTASSCSFIGNNAIDSGG 157
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BLAST of mRNA_H-elongata_contig9626.17021.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-12
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:   34 VPCSNKTELIVVGTTLEAESLTDALLCEGTGRFEVHWLGEVVLSRPVFVSNGTTLNLTGFSTDDADEASAGGAVISGDNTDHLLHVDYGSSVLLTDLTFSNGN 136
            +PCS  T L  V ++ +A +L   L C   G F V W+GEV+++  + V+NGT+LN+TG            GA  +GD+T  L  V+ GSS+  TD+TF+NGN
Sbjct:   74 LPCSLDTSLWTVASSEDAVTLATLLRCSD-GDFAVQWVGEVIVTETIRVTNGTSLNITG---------DGSGATANGDHTTQLFVVEGGSSMHCTDMTFANGN 166
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BLAST of mRNA_H-elongata_contig9626.17021.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.020e-5
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 0 
Query:   44 VVGTTLEAESLTDALLCEGTGRFEVHWLGEVVLSRPVFVSNGTTLNLTGFSTDDADEASAGGAVISGDNTDHLLHVDYGSSVLLTDLTFSNGN 136
            +V  T +A  L +A+ C G G F+V W G V++ + ++VS GTT+N+TG  T      +A  AV  G+    +  V   SS+ L  +T SNG+
Sbjct:  227 LVEDTADAIELANAINCTG-GTFDVEWRGSVIVPQTLWVSQGTTVNITGVDT------TASPAVADGNGESRIFGV-INSSLNLHGMTLSNGH 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9626.17021.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE1.660e-1536.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM10_ECTSI1.460e-1240.78Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FV90_ECTSI8.020e-536.56Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..164
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..33
score: 0.806
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 74..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9626contigH-elongata_contig9626:1184..1675 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9626.17021.1mRNA_H-elongata_contig9626.17021.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9626 1069..1675 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9626.17021.1 ID=prot_H-elongata_contig9626.17021.1|Name=mRNA_H-elongata_contig9626.17021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MEFLHHHHHQLVKGRTRQLLLLLLFLLDVLIDAVPCSNKTELIVVGTTLE
AESLTDALLCEGTGRFEVHWLGEVVLSRPVFVSNGTTLNLTGFSTDDADE
ASAGGAVISGDNTDHLLHVDYGSSVLLTDLTFSNGNRALEFFEESYAEVK
DCIFFNNASSSSGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence