mRNA_H-elongata_contig95939.16990.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: D8LDG1_ECTSI (Dihydrodipicolinate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG1_ECTSI) HSP 1 Score: 177 bits (450), Expect = 9.790e-53 Identity = 80/121 (66.12%), Postives = 103/121 (85.12%), Query Frame = 1
Query: 4 EDLEWKGLWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
E++ ++G+WVMMNG+SGKMG++VAAACLR+GF+IAPYA+ G+G EVSV D +GG PT VTLV S D +GC+ A+ +++RRC GG ++ VDYT PSAVNANAEFY+K+ LNFVMGTTGGDR
Sbjct: 44 EEMAFEGVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGEVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDR 164
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S3XN34_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN34_HETAK) HSP 1 Score: 119 bits (299), Expect = 1.270e-30 Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 37 MNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLVAS-SDVK---GCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDRCV 372
MNG+ G MG EVA AC+RRGFKIAPYA G E + ++DLEGG+ V L+ +D K C+ ++ ++ C G LIA+DYTHP+AVN NA FY+K+ LNFVMGTTGGDR
Sbjct: 1 MNGLPGAMGREVAGACIRRGFKIAPYAFTGPDVTEALIDIDDLEGGEKIGVKLIRGPTDEKKEYACDGIIDGLKAAC-GDYLIAIDYTHPTAVNCNANFYAKHQLNFVMGTTGGDRAA 117
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A835ZG43_9STRA (Dihydrodipicolinate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG43_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.040e-27 Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 34 MMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQ--EVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
MMNG+ G MG EVAAACLR+GFK+APY++ G Q EV+V+D+ GG+ V L+ +G + + +++ R G LI +DYTHP+AVN+NAE Y++ L FVMGTTGGDR
Sbjct: 1 MMNGLPGNMGKEVAAACLRKGFKMAPYSLTGPQIQDTEVTVDDMSGGESFTVGLLKDG-AEGTDEKILEMKARF-GSDLICIDYTHPTAVNSNAELYARLGLPFVMGTTGGDR 111
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S3C098_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C098_9EUKA) HSP 1 Score: 106 bits (264), Expect = 2.600e-25 Identity = 55/114 (48.25%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAG--GQEVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
+M+NG+ G MG E+AAACLRRG ++AP+ + G EV+V+D GG PT V L SS+ + + G ++ +D+THPSAVNANAE+Y+ + L FVMGTTGGDR
Sbjct: 13 LMINGLPGAMGKEIAAACLRRGIELAPFGMTGDAITDTEVTVDDGHGGTPTTVALFRSSEREALAAKVSSSYPT--PGAVVCIDFTHPSAVNANAEWYAAHKLPFVMGTTGGDR 124
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S4IU05_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IU05_9EUKA) HSP 1 Score: 106 bits (265), Expect = 3.250e-25 Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 1
Query: 25 LWVMMNGISGKMGVEVAAACLRRGFKIAPYAICG--AGGQEVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
L +M+NG+ G MGVE+AAACLRRG ++AP+A+ G +E++V+D GG +V L +SD + A + G L+ +D+THP+AVNANAE+Y ++ L FVMGTTGGDR
Sbjct: 45 LALMVNGLPGAMGVEIAAACLRRGVELAPFALTGDIIDQEEITVDDGRGGPQHVVRLYRASDREALAAAAKAAYPM--PGSLVCIDFTHPTAVNANAEWYVQHALPFVMGTTGGDR 158
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: W7U2L4_9STRA (Dihydrodipicolinate reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2L4_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.020e-24 Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLV----ASSDVKGCETALEDVRR--RCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
VM+NG+ G MG EVAAACLRRG ++ + G E V V+D EGGKP + LV + + C+ L+ + R G RLIAVDYTHP+AVN N Y+++ ++FVMGTTGGDR
Sbjct: 46 VMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDR 165
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S1BBW7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBW7_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.070e-24 Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 25 LWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSVN--DLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
L VM+NG+ G M A ACLR+G +AP + G + +N D E GK V L+ SS + ++AL ++ GG L+A+DYTHPSAVN NA++Y +N L FVMGTTGGDR
Sbjct: 63 LRVMINGMPGPMATAAAEACLRKGLTLAPIGLTGPDIEPSVINVVDNESGKSASVRLIPSSSEEEKDSALIGLKIGAGGGNLVAIDYTHPSAVNGNAKWYVENKLPFVMGTTGGDR 178
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: W7TV95_9STRA (Dihydrodipicolinate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TV95_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.250e-24 Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLV----ASSDVKGCETALEDVRR--RCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
VM+NG+ G MG EVAAACLRRG ++ + G E V V+D EGGKP + LV + + C+ L+ + R G RLIAVDYTHP+AVN N Y+++ ++FVMGTTGGDR
Sbjct: 46 VMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDR 165
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S3DTU3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DTU3_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.600e-24 Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 13 EWKGLWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEG--GRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
+ +G++VM+NG+ G M A ACLR+G K++P+A+ G ++ ++V D + G V LV SS L VR + L+A+DYTHPSAVN NA+FY ND+ FVMGTTGGDR
Sbjct: 50 DMEGVYVMVNGMPGPMATAAAEACLRKGLKLSPFALTGPDMEQATITVVDDKTGSSANVLLVPSSTPDEITAQLAGVREAMQDKDAALLAIDYTHPSAVNGNAKFYVANDIPFVMGTTGGDR 171
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7R9UBK1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBK1_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.760e-24 Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSVN------DLEGGKPTLVTLVAS--SDVKGCETALEDVRRRCEGGRL-IAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
VMMNG+ G MG EV AACLR+GF++AP A G +VSV +L+G T V LV +D+ C A+ R + + L IA+DYTHPSAVN NA Y+ +L FV+GTTGGDR
Sbjct: 53 VMMNGLPGAMGREVGAACLRKGFRLAPTAFTGP---DVSVERVEVGPELDGAHTTSVKLVKGPPNDLDACREAVAAARAQLQADELLIAIDYTHPSAVNHNAALYADLELPFVVGTTGGDR 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig95939.16990.1 >prot_H-elongata_contig95939.16990.1 ID=prot_H-elongata_contig95939.16990.1|Name=mRNA_H-elongata_contig95939.16990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp EEDLEWKGLWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSVback to top mRNA from alignment at H-elongata_contig95939:1341..2388+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig95939.16990.1 ID=mRNA_H-elongata_contig95939.16990.1|Name=mRNA_H-elongata_contig95939.16990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig95939:1341..2388+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig95939:1341..2388+ >mRNA_H-elongata_contig95939.16990.1 ID=mRNA_H-elongata_contig95939.16990.1|Name=mRNA_H-elongata_contig95939.16990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig95939:1341..2388+ (Himanthalia elongata Himel1 dioecious)back to top |