mRNA_H-elongata_contig94966.16908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94966.16908.1
Unique NamemRNA_H-elongata_contig94966.16908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: D7G2L3_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2L3_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 1.250e-103
Identity = 159/183 (86.89%), Postives = 171/183 (93.44%), Query Frame = 1 
Query:    1 AFAIPVIEKLL-ASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEACGEEGDRGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHWT 546
            AFA+PVIEKLL A    L+ GR PRVLVMAPTRELAKQVA+DFELT+PSL+TTCIYGGAPYRPQE ALR G+DVVVGTPGRLLDHVGRG L+L D EFIILDEADQMLDMGFK+EMEKVFEACGEEG++GRQMLLFSATMPPWV+KVVKEYMK+DRVFIDLVKEGTVKASKDVEHIGIPCHWT
Sbjct:  200 AFAVPVIEKLLMAGAGSLKPGRKPRVLVMAPTRELAKQVAADFELTAPSLKTTCIYGGAPYRPQEDALRWGVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQGRQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIPCHWT 382
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A836CJP1_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP1_9STRA)

HSP 1 Score: 236 bits (602), Expect = 5.910e-71
Identity = 120/186 (64.52%), Postives = 142/186 (76.34%), Query Frame = 1 
Query:    1 AFAIPVIEKLL-ASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEACGEEGD----RGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIE LL  +       R PRVLVMAPTRELAKQVA+DFE T+P L TT IYGGAPYRPQE ALR G+D+VVGTPGR++D + RG L+L  T++ ILDEADQMLDMGFK+EMEKVF  C  E D    R  Q LLFSATMP WV++V K+YMK DR++IDLV    VKAS+DV+H+ +PC W
Sbjct:  193 AFALPVIEGLLRGNIGAAAARRFPRVLVMAPTRELAKQVAADFESTAPQLRTTTIYGGAPYRPQEEALRRGVDIVVGTPGRIIDMMDRGTLKLDQTDYFILDEADQMLDMGFKEEMEKVFAQCRGEADGAERREVQTLLFSATMPEWVQRVAKDYMKADRMYIDLVGNSAVKASQDVQHVAVPCQW 378
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A3R7GZH5_9STRA (RNA helicase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GZH5_9STRA)

HSP 1 Score: 228 bits (581), Expect = 3.440e-68
Identity = 112/184 (60.87%), Postives = 142/184 (77.17%), Query Frame = 1 
Query:    1 AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEACGE---EGDRGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIEKLL    P  RGRAPRV+ MAPTRELAKQVAS+FE T+PSL T CIYGGA Y+ Q  A R+G+D++VGT GR++DH+ RGNLRL + EF+ILDEAD ML+MGF+++++KVF A  +   EG   RQ LLFSAT+P WV  V  +YM+ DR +++LVK+   +AS DV+HI IPCHW
Sbjct:  153 AFALPVIEKLLLDQRPRSRGRAPRVVCMAPTRELAKQVASEFETTAPSLATVCIYGGASYQSQNNAFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMNQVKNEGTGKRQTLLFSATIPKWVTDVADKYMEKDREYVNLVKDSDDQASTDVQHIAIPCHW 336
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: K3WZA1_GLOUD (RNA helicase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZA1_GLOUD)

HSP 1 Score: 227 bits (578), Expect = 1.820e-67
Identity = 111/183 (60.66%), Postives = 142/183 (77.60%), Query Frame = 1 
Query:    1 AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEACGEEGDRG--RQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIE LL +  PL RGRAPRV+ MAPTRELAKQVA++FE T PSL T CIYGGA Y  Q  A R G+D++VGT GR++DH+ RGNLRL + EF+ILDEAD ML+MGF+++++KVF A  +  +    RQ+LLFSAT+P WV++V  +YMK DR +++LVK+   KAS DV+HI IPCHW
Sbjct:  159 AFALPVIELLLKNAKPLVRGRAPRVVCMAPTRELAKQVATEFETTGPSLSTVCIYGGASYNSQNDAFRKGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEKVKNEQMKRQILLFSATIPSWVKEVADKYMKKDREYVNLVKDSDNKASMDVQHIAIPCHW 341
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A7R9U1A7_9STRA (RNA helicase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1A7_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.600e-66
Identity = 114/190 (60.00%), Postives = 143/190 (75.26%), Query Frame = 1 
Query:    1 AFAIPVIEKLLA----SCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEACG--EEGDRG---RQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIE++L       A   RGR P VL MAPTRELAKQVA DFELT+PSL + C+YGGAP+ PQ   L +G+D+V+GTPGR++DH+ RGNLRL    F ILDEADQMLDMGFK+E+E++F A G  EEGD     RQ LLFSAT+P WV +V K+++++D + IDLV + T+KAS DV HI +PCHW
Sbjct:  206 AFALPVIERVLQMRRDGIASRGRGRPPLVLCMAPTRELAKQVAQDFELTAPSLTSLCVYGGAPFDPQIRTLHSGVDIVIGTPGRVVDHINRGNLRLQHLRFAILDEADQMLDMGFKEELEQIFAAMGSAEEGDGRDWPRQTLLFSATLPAWVGEVKKQFLREDCLSIDLVGDSTIKASTDVSHIAVPCHW 395
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A662X2W6_9STRA (RNA helicase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2W6_9STRA)

HSP 1 Score: 223 bits (569), Expect = 4.430e-66
Identity = 112/185 (60.54%), Postives = 141/185 (76.22%), Query Frame = 1 
Query:    1 AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEAC----GEEGDRGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIE LL    P  RGRAPRV+ MAPTRELAKQVA++FE T PSL T CIYGGA Y+ Q  A R+G+D++VGT GR++DH+ RGNLRL + EF+ILDEAD ML+MGF+++++KVF A      E+  R RQ LLFSAT+P WV  V  +YM+ DR F++LVK+  V+AS DV+HI IPCHW
Sbjct:  168 AFALPVIELLLQDKKPRARGRAPRVVCMAPTRELAKQVATEFEQTGPSLSTVCIYGGASYQSQNNAFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEQVKNEKAGR-RQTLLFSATIPKWVTDVADKYMQKDREFVNLVKDSDVQASTDVQHIAIPCHW 351
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A1V9YZB2_9STRA (RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZB2_9STRA)

HSP 1 Score: 222 bits (566), Expect = 6.170e-66
Identity = 106/181 (58.56%), Postives = 141/181 (77.90%), Query Frame = 1 
Query:    1 AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEACGEEGDRGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AF +PV+E+L+A    + RGRA +V+ MAPTRELAKQVA++FE T+PSL+TTCIYGGA Y+ Q    RNG+D+VVGT GR+ DH+ RG L+L D EF+ILDEAD ML+MGF+++++KVFEA         Q LLFSAT+P W+++V K+YMK DRV+I++V +   +ASKDV+HI IPCHW
Sbjct:  134 AFVLPVVERLIAEGKRVHRGRAAKVICMAPTRELAKQVATEFEQTAPSLKTTCIYGGASYQSQNQDFRNGVDIVVGTTGRICDHLDRGTLKLTDCEFLILDEADTMLEMGFREDIQKVFEAIA-ASKTVHQTLLFSATIPSWLDQVAKKYMKPDRVYINMVNDNEDQASKDVQHIAIPCHW 313
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A2D4BW06_PYTIN (RNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW06_PYTIN)

HSP 1 Score: 226 bits (575), Expect = 7.710e-66
Identity = 112/184 (60.87%), Postives = 141/184 (76.63%), Query Frame = 1 
Query:    1 AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVF---EACGEEGDRGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIE LL    P R GRAPRV+ MAPTRELAKQVA++FELT PSL T CIYGGA Y+ Q  A R G+DV+VGT GR++DH+ RGNLRL   EF+ILDEAD ML+MGF+++++KVF   EA   E    RQ+LLFSAT+P WV++V  +YM+ DR +++LVK+   +AS DV+HI IPCHW
Sbjct:  163 AFALPVIELLLKDTRPKRAGRAPRVVCMAPTRELAKQVATEFELTGPSLSTVCIYGGASYQSQNNAFRQGVDVLVGTTGRVIDHIERGNLRLHACEFLILDEADTMLEMGFREDVQKVFAAMEAVQNEKAMRRQILLFSATIPAWVKEVADKYMRKDREYVNLVKDSEDQASTDVQHIAIPCHW 346
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BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A0N7L6A4_PLAHL (Dead deah box rna n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L6A4_PLAHL)

HSP 1 Score: 219 bits (557), Expect = 1.600e-65
Identity = 111/184 (60.33%), Postives = 139/184 (75.54%), Query Frame = 1 
Query:    1 AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVF---EACGEEGDRGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIE LL    P  RGRAPRV+ MAPTRELAKQVAS+FELT PSL T CIYGGA Y+ Q  A R+G+D++VGT GR++DH+ RGNLRL + EF+ILDEAD ML+MGF+++++KVF   E    E    RQMLLFSAT+P WV+ V  +YMK    +++LVK+   +AS DV+HI IPCHW
Sbjct:   76 AFALPVIELLLKDKRPRARGRAPRVICMAPTRELAKQVASEFELTGPSLSTVCIYGGASYQSQNNAFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMEMVQNERTGKRQMLLFSATIPRWVKDVADKYMKKAE-YVNLVKDSDDQASTDVQHIAIPCHW 258
[Close]
BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Match: A0A6G0RJ92_9STRA (RNA helicase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RJ92_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.780e-65
Identity = 109/184 (59.24%), Postives = 141/184 (76.63%), Query Frame = 1 
Query:    1 AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLETTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIILDEADQMLDMGFKDEMEKVFEACGE---EGDRGRQMLLFSATMPPWVEKVVKEYMKDDRVFIDLVKEGTVKASKDVEHIGIPCHW 543
            AFA+PVIE LL    P  RGRAPRV+ MAPTRELAKQVA++FE ++PSL T CIYGGA Y+ Q  A R+G+D++VGT GR++DH+ RGNLRL + EF+ILDEAD ML+MGF+++++KVF A  +   E    RQ LLFSAT+P WV+ V  +YM+ DR +++LVKE   +AS DV+HI IPCHW
Sbjct:  170 AFALPVIELLLKDKRPRARGRAPRVVCMAPTRELAKQVATEFEQSAPSLSTVCIYGGASYQSQNNAFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEQVKNESAATRQTLLFSATIPKWVKDVADKYMQKDREYVNLVKESDSQASTDVQHIAIPCHW 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94966.16908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2L3_ECTSI1.250e-10386.89RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A836CJP1_9STRA5.910e-7164.52RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A3R7GZH5_9STRA3.440e-6860.87RNA helicase n=3 Tax=Phytophthora kernoviae TaxID=... [more]
K3WZA1_GLOUD1.820e-6760.66RNA helicase n=1 Tax=Globisporangium ultimum (stra... [more]
A0A7R9U1A7_9STRA2.600e-6660.00RNA helicase n=1 Tax=Pinguiococcus pyrenoidosus Ta... [more]
A0A662X2W6_9STRA4.430e-6660.54RNA helicase n=2 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A1V9YZB2_9STRA6.170e-6658.56RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772... [more]
A0A2D4BW06_PYTIN7.710e-6660.87RNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A0N7L6A4_PLAHL1.600e-6560.33Dead deah box rna n=1 Tax=Plasmopara halstedii Tax... [more]
A0A6G0RJ92_9STRA1.780e-6559.24RNA helicase n=4 Tax=Phytophthora TaxID=4783 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94966contigH-elongata_contig94966:3..2171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue2.8e-86
Seed eggNOG ortholog2880.D7G2L3
Preferred nameDDX21
KEGG koko:K13183,ko:K16911
KEGG Pathwayko01110,map01110
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005886,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010501,GO:0010604,GO:0010628,GO:0014070,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017069,GO:0017111,GO:0018130,GO:0019222,GO:0019438,GO:0019843,GO:0030515,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035198,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043330,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051704,GO:0051707,GO:0060255,GO:0061980,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097322,GO:0097659,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-11_002660.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size552
Cds size552
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94966.16908.1prot_H-elongata_contig94966.16908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94966 3..2171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.8039763-CDS-H-elongata_contig94966:2..1131622931344.8039763-CDS-H-elongata_contig94966:2..113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 3..113 +
1691679798.4794774-CDS-H-elongata_contig94966:2..1131691679798.4794774-CDS-H-elongata_contig94966:2..113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 3..113 +
1622931344.8164268-CDS-H-elongata_contig94966:511..5891622931344.8164268-CDS-H-elongata_contig94966:511..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 512..589 +
1691679798.4928534-CDS-H-elongata_contig94966:511..5891691679798.4928534-CDS-H-elongata_contig94966:511..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 512..589 +
1622931344.8281448-CDS-H-elongata_contig94966:1072..12341622931344.8281448-CDS-H-elongata_contig94966:1072..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 1073..1234 +
1691679798.5034943-CDS-H-elongata_contig94966:1072..12341691679798.5034943-CDS-H-elongata_contig94966:1072..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 1073..1234 +
1622931344.840304-CDS-H-elongata_contig94966:1497..15811622931344.840304-CDS-H-elongata_contig94966:1497..1581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 1498..1581 +
1691679798.5188196-CDS-H-elongata_contig94966:1497..15811691679798.5188196-CDS-H-elongata_contig94966:1497..1581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 1498..1581 +
1622931344.856442-CDS-H-elongata_contig94966:2054..21711622931344.856442-CDS-H-elongata_contig94966:2054..2171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 2055..2171 +
1691679798.5289097-CDS-H-elongata_contig94966:2054..21711691679798.5289097-CDS-H-elongata_contig94966:2054..2171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94966 2055..2171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94966.16908.1

>prot_H-elongata_contig94966.16908.1 ID=prot_H-elongata_contig94966.16908.1|Name=mRNA_H-elongata_contig94966.16908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
AFAIPVIEKLLASCAPLRRGRAPRVLVMAPTRELAKQVASDFELTSPSLE
TTCIYGGAPYRPQEIALRNGLDVVVGTPGRLLDHVGRGNLRLGDTEFIIL
DEADQMLDMGFKDEMEKVFEACGEEGDRGRQMLLFSATMPPWVEKVVKEY
MKDDRVFIDLVKEGTVKASKDVEHIGIPCHWTR*
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mRNA from alignment at H-elongata_contig94966:3..2171+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94966.16908.1 ID=mRNA_H-elongata_contig94966.16908.1|Name=mRNA_H-elongata_contig94966.16908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2169bp|location=Sequence derived from alignment at H-elongata_contig94966:3..2171+ (Himanthalia elongata Himel1 dioecious)
GCTTTCGCCATACCGGTGATCGAGAAGCTGCTGGCCTCTTGCGCTCCCCT
GAGGCGCGGCCGCGCGCCGAGGGTCTTGGTCATGGCTCCCACGCGAGAGC
TCGCCAAGCAGGTGGGCATTTTGGACGGCTCTACACAAGAACTCACCGGG
GCTTGGATTGTTATTTTGATGTTGCGTTTCCATGGCGAGGAGTTTTAACT
TGTAGACCTTTGAGTGGATGTTTTTTCCATTTTTTCCTTGCCTCTCCCCC
ATTCTTTTGTGGGTTATTTTTGTAATCTTTGTTTTTGTAATCTTTGTAAT
CTTTGTAAAGAGTTATCGAGTCTAACCGTGACCTCCTAAAGGGAAAAGCG
GTCATCGGGCCTCTTGCCTCTGCTATGTTGTGCTCTATTTTTTCTTCTAG
CTTCGCCGAGAACAAAGAGCAATTGCCATCTCTTGTTTACACCTCAACAC
CAATTCATTTTTTTTTTTGTTCCCCACCCCAAATGTCGCGGCTGCAATGA
AAACACTAGGTGGCTTCGGATTTTGAGTTGACCTCGCCGTCTCTCGAGAC
GACGTGCATCTATGGCGGTGCCCCTTACCGACCTCAGGTGCAGAGCGGTA
GAAGTTCGTAAGAGAAGTTTCGCCAGAGCGAAGAGGCAGGGGTAGAGGGG
AAGCTGGTAATGCTGGCGATGACGAAGTGGATATCTCGCTCTGTGTAGTG
TGCTGCAGGCGCGAGGCTACTACGAACGATCCTCCTGTCGAACGCTCTGT
TGAGGCCCTGAAGGTCCGCGCGGTTCCTTTGCTCCAGCTTTTTGCTCACG
CTTTAGAGGGCGGATGGTGTTGCATTTGCTTCGTGTATTAACTTCGTTAA
TATATATATATATATATATATATATATATATATTTCTATTTCACTCTCTC
AACGGCGGATGTAATATGATTGTATTAGGCCGCAATTTATGTTTTTTTAC
AAAAACAATATCTAACGGCGGCGCTGAGTGGTCGAAATAAACACTACGCT
TAGTATACGAAACCCCTCGCCTGTCTTTCCCCCCATTTCTCCACTCCGCT
AAATGCCTCTCTGCCCGCAGGAAATCGCGTTGAGGAATGGCTTGGACGTC
GTCGTTGGAACCCCCGGCAGGCTGCTGGACCATGTGGGCAGAGGCAACCT
CCGCCTGGGGGATACGGAGTTCATCATCCTTGACGAGGCGGACCAGATGC
TGGACATGGGGTTTAAGGATGAGATGGAAAAGGTGCCATGAACCGCGATG
ATGAAATGGCGTAGAATCAGACACAGCAGTCACTGTCAGCGTCAGCATCT
CACGCCTTCTATTTTTCCTCATTCTCTCTATATTTCTCTCTATATCCCGT
TTGGTCTCTCCGCCGGTTAAAGCGAGGAATGCTTAATGCTTCATTTTTGT
GGAAAACTGCTCACCGAGGAGAGTGTTATCGGCGGCGACAGCGACGCAAC
GGCTAACGTGCGCGCTTGAAAATCGCTTGCTGAAATAAAACACAGGTTTT
TGAGGCGTGTGGGGAGGAGGGGGACAGGGGACGCCAGATGCTACTCTTCA
GCGCCACGATGCCCCCTTGGGTGGAGAAGGTAAAGGTTTCTTGATAATGA
GGCGTGCGTTTAATGGGAAAGTGGTGGTGTGAAGGTGTGACCGTGTCCCA
GTCGGTAGCCTTGGATCAAAAGTTTTTCCTGGGCGGAAAAGTTTCGATAT
TTATATTTTTTCCCCGAGATAGTTTCTGATCGGTCTTAGACTTGACAGAG
TACAGAAGCGTGCGGACAAGGAGATGCCGCGGTTGGTCGAGAGCTCATCC
GGCCAAGAGTAGATATAGGCACGCGCAGTTTTGAACGAGCGTGCCCTTTA
TTTTGCGGAAGTAGCAGCCGTTTGCTCGAAGAGCTTCTTCGGCGGAGTGT
CACAAGTACGCAGGTCGTGAGGCGGTGACCATTTCACCCATCCAGTCATC
CATCCAATCTATCTAATTATTCATGATTATTTATCTACCCCCCGTCCACC
CGGAGGCACGATTGATCCATTTTGATATTTGTTCTTCTTGCGGTCCTTGC
AGGTAGTAAAGGAATACATGAAAGATGACCGCGTTTTCATCGACCTCGTG
AAGGAGGGCACGGTCAAGGCCTCAAAGGACGTCGAGCACATCGGCATCCC
GTGCCACTGGACCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig94966:3..2171+

>mRNA_H-elongata_contig94966.16908.1 ID=mRNA_H-elongata_contig94966.16908.1|Name=mRNA_H-elongata_contig94966.16908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig94966:3..2171+ (Himanthalia elongata Himel1 dioecious)
GCTTTCGCCATACCGGTGATCGAGAAGCTGCTGGCCTCTTGCGCTCCCCT
GAGGCGCGGCCGCGCGCCGAGGGTCTTGGTCATGGCTCCCACGCGAGAGC
TCGCCAAGCAGGCTTTCGCCATACCGGTGATCGAGAAGCTGCTGGCCTCT
TGCGCTCCCCTGAGGCGCGGCCGCGCGCCGAGGGTCTTGGTCATGGCTCC
CACGCGAGAGCTCGCCAAGCAGGTGGCTTCGGATTTTGAGTTGACCTCGC
CGTCTCTCGAGACGACGTGCATCTATGGCGGTGCCCCTTACCGACCTCAG
GTGGCTTCGGATTTTGAGTTGACCTCGCCGTCTCTCGAGACGACGTGCAT
CTATGGCGGTGCCCCTTACCGACCTCAGGAAATCGCGTTGAGGAATGGCT
TGGACGTCGTCGTTGGAACCCCCGGCAGGCTGCTGGACCATGTGGGCAGA
GGCAACCTCCGCCTGGGGGATACGGAGTTCATCATCCTTGACGAGGCGGA
CCAGATGCTGGACATGGGGTTTAAGGATGAGATGGAAAAGGAAATCGCGT
TGAGGAATGGCTTGGACGTCGTCGTTGGAACCCCCGGCAGGCTGCTGGAC
CATGTGGGCAGAGGCAACCTCCGCCTGGGGGATACGGAGTTCATCATCCT
TGACGAGGCGGACCAGATGCTGGACATGGGGTTTAAGGATGAGATGGAAA
AGGTTTTTGAGGCGTGTGGGGAGGAGGGGGACAGGGGACGCCAGATGCTA
CTCTTCAGCGCCACGATGCCCCCTTGGGTGGAGAAGGTTTTTGAGGCGTG
TGGGGAGGAGGGGGACAGGGGACGCCAGATGCTACTCTTCAGCGCCACGA
TGCCCCCTTGGGTGGAGAAGGTAGTAAAGGAATACATGAAAGATGACCGC
GTTTTCATCGACCTCGTGAAGGAGGGCACGGTCAAGGCCTCAAAGGACGT
CGAGCACATCGGCATCCCGTGCCACTGGACCAGGTAAGTAGTAAAGGAAT
ACATGAAAGATGACCGCGTTTTCATCGACCTCGTGAAGGAGGGCACGGTC
AAGGCCTCAAAGGACGTCGAGCACATCGGCATCCCGTGCCACTGGACCAG
GTAA
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