mRNA_H-elongata_contig94950.16906.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A6H5KP12_9PHAE (Spb1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP12_9PHAE) HSP 1 Score: 382 bits (980), Expect = 1.120e-128 Identity = 208/258 (80.62%), Postives = 227/258 (87.98%), Query Frame = 1
Query: 1 MTEDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNGFE-----------------PRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAKIKMVDARM 723
M EDGIADDDLQ+VSGER+LENLDPKER K+EKKRGLIRAGMG +A ++ E GFE P+FAV+GL V D+REYGSD+EPYDDEDRA+QLAL TMMLRKHRAKEM+DAAYNRFSWNDD DLPDWFVDDEKRH+RPQVPLPPAL+EQMKNKFMSLATKPIKKVAEARARKRKRA+QRL +AKKKATA+AANP+MSEREKLKAVQQAMKKGAK DIPSKVYVVAGKGP+G KKKGAKIKMVDARM
Sbjct: 209 MGEDGIADDDLQVVSGERDLENLDPKERVKLEKKRGLIRAGMGAAA-DDAEDAGFEVAKASGAAMAMLGKRYKPKFAVDGLDVEDDREYGSDQEPYDDEDRARQLALGTMMLRKHRAKEMVDAAYNRFSWNDDADLPDWFVDDEKRHYRPQVPLPPALVEQMKNKFMSLATKPIKKVAEARARKRKRAAQRLVNAKKKATALAANPDMSEREKLKAVQQAMKKGAKQDIPSKVYVVAGKGPSGTKKKGAKIKMVDARM 465
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: D7FSF8_ECTSI (Putative rRNA methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF8_ECTSI) HSP 1 Score: 369 bits (948), Expect = 3.210e-118 Identity = 200/250 (80.00%), Postives = 220/250 (88.00%), Query Frame = 1
Query: 1 MTEDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNGFE-----------------PRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK 699
M EDGIADDDLQ+VSGER+LENLDPKER K+EKKRGLIRAGMG +A +E E GFE P+FAV+GL V D+R+YGSD+EPYDDEDRA+QLAL TMMLRKHRAKEM+DAAYNRFSWNDD DLPDWFVDDEKRH+RPQVPLPPAL+EQMKNKFMSLATKPIKKVAEARARKRKRA+QRL++AKKKATA+AANP+MSEREKLKAVQQAMKKGAK DIPSKVYVVAGKGP+G KKKGAK
Sbjct: 716 MGEDGIADDDLQVVSGERDLENLDPKERVKLEKKRGLIRAGMGAAA-DEAEDTGFEVAKASGAAMAMLGKRYKPKFAVDGLDVEDDRDYGSDQEPYDDEDRARQLALGTMMLRKHRAKEMVDAAYNRFSWNDDADLPDWFVDDEKRHYRPQVPLPPALVEQMKNKFMSLATKPIKKVAEARARKRKRAAQRLTNAKKKATALAANPDMSEREKLKAVQQAMKKGAKQDIPSKVYVVAGKGPSGTKKKGAK 964
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A835Z2H0_9STRA (Putative rRNA methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2H0_9STRA) HSP 1 Score: 238 bits (607), Expect = 3.210e-69 Identity = 144/258 (55.81%), Postives = 185/258 (71.71%), Query Frame = 1
Query: 28 DLQIVSGERE-------LENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNGFEPR------FAVEGLAVA--------DEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVA-----GKGPTGAKKKGAKIKMVDARM 723
D QI S +R+ L ++PK++ K + R LI AGMG + K FE A++G A D+REYGS+EE YDDEDRA+QLAL TMMLRKHRAKE++DAAYNR++WND K LP+WF DDE++H+RPQVP+PP L+ QMK KF+SL++KPIKKVAEARARKRKRAS +L +AKK+A A+A+NP+MS+R+KLK +QQA+KKGA +D P+K YVVA GK T K KG+K+K VDAR+
Sbjct: 662 DKQIRSEKRKKDAERKALAAMEPKQKEKELRARKLIAAGMGQPQQADDGK-AFEIAPAQAIMLALKGNGSAGNGLPPPIDDREYGSEEEDYDDEDRARQLALGTMMLRKHRAKEILDAAYNRYTWNDPKALPEWFTDDERKHYRPQVPIPPELVAQMKEKFLSLSSKPIKKVAEARARKRKRASTKLKAAKKQANAMASNPDMSDRQKLKVIQQALKKGAAADKPTKSYVVAKKFQGGKPSTSGKTKGSKVKFVDARL 918
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A397FG60_9STRA (Spb1_C domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FG60_9STRA) HSP 1 Score: 199 bits (505), Expect = 2.070e-59 Identity = 124/248 (50.00%), Postives = 169/248 (68.15%), Query Frame = 1
Query: 7 EDGIADDDLQIVSGERELEN-LDPKERAKIEKKRGLIRAGMGISAPEEP--EKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
EDG DD+ + E + L + + +K LI+AGMG SA P + FE A L V D R+Y SD E YD+ED+A+ +A+ATMML+KH+AKEM+D +YNR++WND DLPDWF DDE+RH+RPQ+ +P L++QMK KFM +ATKP+KKVAEARARKR++ +++ +AKKKA IA P+MS REKLKA+ +AMK AK+ SK+YV++ +G + A KG K +K+VD RM
Sbjct: 43 EDGFLDDEATATAKEEARKTPLTALQLQRKNEKESLIKAGMG-SAAHIPVSSTSAFEVVKADVELPVMDARQYDSDHEDYDEEDKARTMAIATMMLKKHKAKEMVDDSYNRYAWNDPTDLPDWFQDDEERHYRPQLTVPKHLMDQMKEKFMDIATKPVKKVAEARARKRRQTLKKVKAAKKKANDIANLPDMSTREKLKAIDKAMKT-AKTKKESKLYVISRRGRSAANTKGHKKGDKGAVKVVDPRM 288
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A024TJC0_9STRA (Putative rRNA methyltransferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJC0_9STRA) HSP 1 Score: 206 bits (524), Expect = 9.340e-58 Identity = 122/248 (49.19%), Postives = 172/248 (69.35%), Query Frame = 1
Query: 7 EDGIADDDLQIVSGERELENLDPKERAKIEKKR---GLIRAGMGISAPEEPEKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
+DG DDD + +EL P A++++K LI+AGMG +AP + FE L V D R+Y SD E YD+ED+A+ +A+ATMML+KH+AK+M+D +YNR++WND DLPDWF+DDE+RH+RPQ+ +P L++QMK +FM +ATKP+KKVAEARARKR++ +++ +AKKKA IA P+MS REKLKA+ +AMK AK+ SK+YV++ +G + A KG K +K+VD RM
Sbjct: 622 DDGFLDDDATAHA--KELARKTPLTAAQLQRKNEKEALIKAGMGTAAPPVAASSTFEVVQPDVELPVMDSRQYDSDHEDYDEEDKARTMAIATMMLQKHKAKDMIDDSYNRYAWNDPADLPDWFLDDEERHYRPQLAVPKHLMDQMKERFMDIATKPVKKVAEARARKRRQTLKKVKAAKKKANDIANLPDMSTREKLKAIDKAMK-AAKTKKESKLYVISRRGRSAANTKGFKKGDKGAVKVVDPRM 866
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A8K1CK50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK50_PYTOL) HSP 1 Score: 204 bits (520), Expect = 3.500e-57 Identity = 130/255 (50.98%), Postives = 175/255 (68.63%), Query Frame = 1
Query: 7 EDGIADDDLQIVSGERELENLDPKERAKIE-KKRGLIRAGMGISAPEEPEKNGFEPRFAV--------EG-LAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKG------PTGAKKKGAKIKMVDARM 723
E G ADDD V +E+ D + +K+ +K+ LIR GMG + + +G + V EG L V D+R+Y SD E YD EDRAK LALATMM+R+ +AKEM+DA+YNRF+WND +LPDWFVDDE++H+RPQ+P+P LLEQMK +FM +ATKP+KKVAEARARK+++ ++L +AKKKAT IA P+MS REKLKA+ +AMK GA+ +KVYVV+ +G + KK K+K+VD R+
Sbjct: 626 EAGNADDDSDAV-----MESDDEGKESKVSAEKKALIRLGMGAAVNQ---SSGVGKEYEVVAAGDEAEEGPLPVLDDRKYDSDHEEYDAEDRAKTLALATMMIRRDKAKEMIDASYNRFAWNDSTELPDWFVDDEEKHYRPQMPIPKKLLEQMKERFMDMATKPVKKVAEARARKQRQQMKKLKAAKKKATDIANLPDMSTREKLKAINRAMK-GAQLKKDNKVYVVSRRGGRSSTAQSAGKKPTGKVKLVDPRL 871
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A1V9YZ74_9STRA (rRNA methyltransferase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZ74_9STRA) HSP 1 Score: 198 bits (503), Expect = 4.430e-57 Identity = 118/215 (54.88%), Postives = 153/215 (71.16%), Query Frame = 1
Query: 100 KRGLIRAGMGISAPEEP-EKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
K LI+AGMG SA P FE A L +AD R+Y SD E YD ED+A+ +ALA MMLR+ AKE++D +YNR++WND +LPDWF+DDE+RHHRPQ+P+P L+EQMK KFM +ATKP+KKVAEARARK+++ ++L AKKKA IA P+MS REKLKA+ +AMK AK+ SK+YVV+ +G + A KG K +K+VD RM
Sbjct: 268 KEALIKAGMGASALAAPLTTTNFEVVKAEPELPIADPRKYDSDNEDYDAEDQARTMALAHMMLRRDTAKELVDNSYNRYAWNDPTELPDWFLDDEERHHRPQIPVPKHLMEQMKEKFMEMATKPVKKVAEARARKQRQQMKKLKVAKKKANDIANLPDMSTREKLKAIDKAMK-NAKTKKESKLYVVSRRGRSAANSKGFKKGDKGSVKVVDPRM 481
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A6G0X934_9STRA (Putative rRNA methyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X934_9STRA) HSP 1 Score: 204 bits (519), Expect = 4.600e-57 Identity = 122/248 (49.19%), Postives = 170/248 (68.55%), Query Frame = 1
Query: 7 EDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNG---FEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
EDG D++ + ++ L ++ + ++K LI+AGMG S + FE A + L V D REY SD E YD+ED+A+ +A+ATMML+KH+AKE++D +YNR++WND DLPDWFVDDE+RH+RPQ+ +P L++QMK KFM +ATKP+KKVAEARARKR++ +++ +AKKKA IA P+MS REKLKA+ +AMK AK SK+YVV+ +G + A KG K +K+VD RM
Sbjct: 623 EDGFLDEEAPVEDSKKPLT---AQQMQRKQEKEALIKAGMGASVNSSSTLSASSTFEVVKADDELPVVDSREYDSDHEDYDEEDKARTMAIATMMLKKHKAKEIVDDSYNRYAWNDPSDLPDWFVDDEERHYRPQLQVPKHLMDQMKEKFMDIATKPVKKVAEARARKRRQMMKKVKAAKKKANDIANLPDMSTREKLKAIDKAMK-SAKVKKESKLYVVSRRGRSAANSKGYKKGDKGAVKVVDPRM 866
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A484DZR4_BRELC (Spb1_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZR4_BRELC) HSP 1 Score: 193 bits (490), Expect = 1.740e-56 Identity = 119/254 (46.85%), Postives = 169/254 (66.54%), Query Frame = 1
Query: 16 IADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMG--------------ISAPEEPEKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKG---PTGAKKKG-AKIKMVDARM 723
+ D+ +++ E +++ D +K+ LIR+GMG ++A EEP++N L + DER+Y SD E YD EDRAK LALA+MM+ K +AK+++DA+YNR++WND + LPDWFVDDE++H+RPQ+P+P ++ QMK +FM +ATKP+KKVAEAR RK + ++L +AKK+AT IA P+MS REKLKA+ +AMK GA+ SKVYVV+ +G G KK G K+K+VD RM
Sbjct: 108 VGSDEEAVINAEALMDSNDEL----TAEKKALIRSGMGAALDSTNSAEKIEVVAAGEEPDEN---------ALPIYDERKYDSDHEEYDAEDRAKTLALASMMIHKSKAKDLIDASYNRYAWNDSEALPDWFVDDEEKHNRPQIPIPKHVMAQMKERFMEMATKPVKKVAEARGRKNRLKMKKLKAAKKQATDIANLPDMSTREKLKAIDRAMK-GARLKKESKVYVVSTRGGAKTAGGKKAGKGKVKIVDPRM 347
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A418EUC8_9STRA (Spb1_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EUC8_9STRA) HSP 1 Score: 199 bits (505), Expect = 2.570e-56 Identity = 124/248 (50.00%), Postives = 169/248 (68.15%), Query Frame = 1
Query: 7 EDGIADDDLQIVSGERELEN-LDPKERAKIEKKRGLIRAGMGISAPEEP--EKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
EDG DD+ + E + L + + +K LI+AGMG SA P + FE A L V D R+Y SD E YD+ED+A+ +A+ATMML+KH+AKEM+D +YNR++WND DLPDWF DDE+RH+RPQ+ +P L++QMK KFM +ATKP+KKVAEARARKR++ +++ +AKKKA IA P+MS REKLKA+ +AMK AK+ SK+YV++ +G + A KG K +K+VD RM
Sbjct: 363 EDGFLDDEATATAKEEARKTPLTALQLQRKNEKESLIKAGMG-SAAHIPVSSTSAFEVVKADVELPVMDARQYDSDHEDYDEEDKARTMAIATMMLKKHKAKEMVDDSYNRYAWNDPTDLPDWFQDDEERHYRPQLTVPKHLMDQMKEKFMDIATKPVKKVAEARARKRRQTLKKVKAAKKKANDIANLPDMSTREKLKAIDKAMKT-AKTKKESKLYVISRRGRSAANTKGHKKGDKGAVKVVDPRM 608 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig94950.16906.1 >prot_H-elongata_contig94950.16906.1 ID=prot_H-elongata_contig94950.16906.1|Name=mRNA_H-elongata_contig94950.16906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp MTEDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEPback to top mRNA from alignment at H-elongata_contig94950:305..2152- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig94950.16906.1 ID=mRNA_H-elongata_contig94950.16906.1|Name=mRNA_H-elongata_contig94950.16906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1848bp|location=Sequence derived from alignment at H-elongata_contig94950:305..2152- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig94950:305..2152- >mRNA_H-elongata_contig94950.16906.1 ID=mRNA_H-elongata_contig94950.16906.1|Name=mRNA_H-elongata_contig94950.16906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig94950:305..2152- (Himanthalia elongata Himel1 dioecious)back to top |