prot_H-elongata_contig94823.16893.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig94823.16893.1
Unique Nameprot_H-elongata_contig94823.16893.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig94823.16893.1 vs. uniprot
Match: D7FM35_ECTSI (tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM35_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.160e-30
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 0 
Query:    1 MVGRASYYDPWAFRHTDSVIFGSTDPGFTRREIMERCIDRFEDYTREWQRESPEHHKTRDHVLGTLVKPLGYISSGTRVRR 81
            MVGRA+Y+DPW FRHTDS +FGS+DPGFTRREIMERC+DRF +  +E +RE PE ++TR   LGT+ KPLGY+SSG R  R
Sbjct:  241 MVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSR 321
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BLAST of mRNA_H-elongata_contig94823.16893.1 vs. uniprot
Match: A0A6G0XXM5_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXM5_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.140e-5
Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 0 
Query:    1 MVGRASYYDPWAFRHTDSVIFGSTDPGFTRREIMERCIDRFEDYTREW 48
            M+GRA+Y  PW F   D ++FG ++PG +RR+++   +D  ED    W
Sbjct:  243 MIGRAAYNTPWNFCDADRLLFGESNPGLSRRQVVANYLDYAEDMQERW 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94823.16893.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM35_ECTSI1.160e-3066.67tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus Ta... [more]
A0A6G0XXM5_9STRA6.140e-539.58tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94823contigH-elongata_contig94823:701..1354 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94823.16893.1mRNA_H-elongata_contig94823.16893.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig94823 687..2513 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig94823.16893.1 ID=prot_H-elongata_contig94823.16893.1|Name=mRNA_H-elongata_contig94823.16893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MVGRASYYDPWAFRHTDSVIFGSTDPGFTRREIMERCIDRFEDYTREWQR
ESPEHHKTRDHVLGTLVKPLGYISSGTRVRRKLPVCV*
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