mRNA_H-elongata_contig94692.16883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94692.16883.1
Unique NamemRNA_H-elongata_contig94692.16883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94692.16883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94692contigH-elongata_contig94692:306..1264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size302
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94692.16883.1prot_H-elongata_contig94692.16883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94692 415..1264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.2585373-UTR-H-elongata_contig94692:305..4141622931342.2585373-UTR-H-elongata_contig94692:305..414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94692 306..414 -
1691679797.345761-UTR-H-elongata_contig94692:305..4141691679797.345761-UTR-H-elongata_contig94692:305..414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94692 306..414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.2750645-CDS-H-elongata_contig94692:414..4751622931342.2750645-CDS-H-elongata_contig94692:414..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94692 415..475 -
1691679797.354884-CDS-H-elongata_contig94692:414..4751691679797.354884-CDS-H-elongata_contig94692:414..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94692 415..475 -
1622931342.2928185-CDS-H-elongata_contig94692:623..6761622931342.2928185-CDS-H-elongata_contig94692:623..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94692 624..676 -
1691679797.3648856-CDS-H-elongata_contig94692:623..6761691679797.3648856-CDS-H-elongata_contig94692:623..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94692 624..676 -
1622931342.3083663-CDS-H-elongata_contig94692:1186..12641622931342.3083663-CDS-H-elongata_contig94692:1186..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94692 1187..1264 -
1691679797.3739262-CDS-H-elongata_contig94692:1186..12641691679797.3739262-CDS-H-elongata_contig94692:1186..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94692 1187..1264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94692.16883.1

>prot_H-elongata_contig94692.16883.1 ID=prot_H-elongata_contig94692.16883.1|Name=mRNA_H-elongata_contig94692.16883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
LVSRVGRHLPCNTIQTISDFSKISDRTCGRTSRHRRGFLHLPSSVRTPTQ
TCDCAQIRTHFPT*
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mRNA from alignment at H-elongata_contig94692:306..1264-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94692.16883.1 ID=mRNA_H-elongata_contig94692.16883.1|Name=mRNA_H-elongata_contig94692.16883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=959bp|location=Sequence derived from alignment at H-elongata_contig94692:306..1264- (Himanthalia elongata Himel1 dioecious)
CTGGTCAGCCGAGTTGGTCGCCATCTGCCATGCAACACCATCCAGACCAT
CTCTGACTTCAGCAAAATATCAGACAGGGTGAGATACAAATGTGGATTAC
CGTAGATTTGAAGACAATGTACTGTACCCGTATATCGTGAGAGACGCTAC
AGTAGCGACATCCCTCAGATCCATCAGCAGCAGTGTTTGAAGAGACGAGG
TAAGAGGGAAGCGAAGACACCAAGAGAAGGATTCGCGCGGAAAGCTGTTT
GTTGGAAGCTTATCGCTTCTGTTCTTCTGCTACGATTATAGTGGTACGGA
CAGGTGACCTCCGAAGCAGTTATCTTCCTCCAAATTTCATGGGTTTCTCC
ACCAAGCCACGTCGGTGTTTCGTCGTAATGCCGACACCGAGAGTCTCAAT
GAGAACTACTGATGCTTCAGGAGAAACTTAATAAAGCACTAGACACACGC
CATGCGCCAGGTTGGAAGAAATGAACGAAACTTGAACGCCCACCACCCGG
ACGGATAGACATCGGCAATCGTTTCTATCGGTGACGACTTCAAGTCATCT
GTTTTATTGATCATCATCCCATTTATTCTGTACGCCAGACTTGTGGACGC
ACCAGCCGGCACCGCAGAGGATTTCTCCATCTTCCTTCTTCGTGAGAACG
CCTACACAGACTTGTGACTGCGCCCAGATTCGAACTCACTTCCCAACGTG
AGAAGGNNNNNNNNNNATTGTAATTGTAATAGTGGCACCGTAAAGTAGAG
GCGGGAGCTGAAGTCTTCATGTCGGCCTGGTCCACCAAGCGTGAGAACGC
CTACACAGACTTGTGACTGCGCCCAGATTCGAACTCACTTCCCAACGTGA
GAAGGTTTCGAGGTTACCCCACCGGGGCGACCGGTGTGATCTATTGTCAC
AAAGCACTCTCACATCTGGCCACCTTCCGATATGTACCTTCACCCTTCAC
GGTACTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig94692:306..1264-

>mRNA_H-elongata_contig94692.16883.1 ID=mRNA_H-elongata_contig94692.16883.1|Name=mRNA_H-elongata_contig94692.16883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig94692:306..1264- (Himanthalia elongata Himel1 dioecious)
CTGGTCAGCCGAGTTGGTCGCCATCTGCCATGCAACACCATCCAGACCAT
CTCTGACTTCAGCAAAATATCAGACAGGCTGGTCAGCCGAGTTGGTCGCC
ATCTGCCATGCAACACCATCCAGACCATCTCTGACTTCAGCAAAATATCA
GACAGGACTTGTGGACGCACCAGCCGGCACCGCAGAGGATTTCTCCATCT
TCCTTCTTCACTTGTGGACGCACCAGCCGGCACCGCAGAGGATTTCTCCA
TCTTCCTTCTTCCGTGAGAACGCCTACACAGACTTGTGACTGCGCCCAGA
TTCGAACTCACTTCCCAACGTGACGTGAGAACGCCTACACAGACTTGTGA
CTGCGCCCAGATTCGAACTCACTTCCCAACGTGA
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