mRNA_H-elongata_contig9387.16825.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A2R4QPZ1_9PHAE (Light-independent protochlorophyllide reductase subunit N n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPZ1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.490e-13 Identity = 48/65 (73.85%), Postives = 51/65 (78.46%), Query Frame = -1
Query: 2484 KNNENPIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2678
KN PIIIEKP+NYNQVDRIRDMKPDLVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 362 KNLPLPIIIEKPDNYNQVDRIRDMKPDLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 422
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A8F0JZA7_9PHAE (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZA7_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 3.450e-13 Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = -1
Query: 2484 KNNENPIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2678
KN PIIIEKP+NYNQVDRIRDM+PDLVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 360 KNIPIPIIIEKPDNYNQVDRIRDMRPDLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 420
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A8F0F745_9PHAE (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F745_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 5.870e-13 Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = -1
Query: 2484 PIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2663
PIIIEKP+NYNQVDRIR+MKPDLVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 359 PIIIEKPDNYNQVDRIREMKPDLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 414
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A141BSG8_9PHAE (Light-independent protochlorophyllide reductase subunit N n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSG8_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 6.090e-13 Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = -1
Query: 2484 PIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2663
PIIIEKP+NYNQVDRIRD+KPDLVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 365 PIIIEKPDNYNQVDRIRDIKPDLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 420
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: D1J7A7_ECTSI (Light-independent protochlorophyllide reductase subunit N n=42 Tax=Phaeophyceae TaxID=2870 RepID=D1J7A7_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 6.240e-13 Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = -1
Query: 2484 KNNENPIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2678
KN PII+EKP+N+NQVDRIRDMKPDLVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 364 KNVPIPIIVEKPDNFNQVDRIRDMKPDLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 424
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A7S6U9V0_9STRA (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V0_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.360e-12 Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = -1
Query: 2484 KNNENPIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2678
KN PII+EKP+NYNQVDRI+DMKP LVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 357 KNIPVPIIVEKPDNYNQVDRIQDMKPHLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 417
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A2I4Q2D6_9PHAE (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2D6_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 4.510e-12 Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -1
Query: 2484 PIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2663
PIIIEKP+NYNQVDRIR+++PDLVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 368 PIIIEKPDNYNQVDRIREIRPDLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 423
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: CHLN_PORPU (Light-independent protochlorophyllide reductase subunit N n=15 Tax=Bangiaceae TaxID=31345 RepID=CHLN_PORPU) HSP 1 Score: 80.5 bits (197), Expect = 5.370e-12 Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = -1
Query: 2484 PIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2663
P I+EKP+NYNQ+DRIRD+KPDLVI TGM+HANPL + K SVEFTFAQIHGFT
Sbjct: 349 PTIVEKPDNYNQLDRIRDLKPDLVI-TGMAHANPL---EARGINTKWSVEFTFAQIHGFT 404
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A3R5TA75_9STRA (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Pseudellipsoidion edaphicum TaxID=1431838 RepID=A0A3R5TA75_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 7.520e-12 Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = -1
Query: 2484 PIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2663
PII+EKP+NYNQ+DRI+D+KPDLVI TGM+HANPL + K SVEFTF+QIHGFT
Sbjct: 358 PIIVEKPDNYNQLDRIQDLKPDLVI-TGMAHANPL---QSRGINTKWSVEFTFSQIHGFT 413
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A3R5QLI9_9STRA (Light-independent protochlorophyllide reductase subunit N n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5QLI9_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 9.650e-12 Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = -1
Query: 2484 PIIIEKPNNYNQVDRIRDMKPDLVIITGMSHANPLIH*KQEV*IPKRSVEFTFAQIHGFT 2663
PII+EKP+NYNQVDRI+D++PDLVI TGM+HANPL + K SVEFTF+QIHGFT
Sbjct: 359 PIIVEKPDNYNQVDRIKDLEPDLVI-TGMAHANPL---EARGINTKWSVEFTFSQIHGFT 414 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9387.16825.1 >prot_H-elongata_contig9387.16825.1 ID=prot_H-elongata_contig9387.16825.1|Name=mRNA_H-elongata_contig9387.16825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=561bp MSKSRHLPHWPPRQSSFEDILPMMHNNSLGDAQALSKATTGPHGRGVPGPback to top mRNA from alignment at H-elongata_contig9387:1667..4965+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9387.16825.1 ID=mRNA_H-elongata_contig9387.16825.1|Name=mRNA_H-elongata_contig9387.16825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3299bp|location=Sequence derived from alignment at H-elongata_contig9387:1667..4965+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9387:1667..4965+ >mRNA_H-elongata_contig9387.16825.1 ID=mRNA_H-elongata_contig9387.16825.1|Name=mRNA_H-elongata_contig9387.16825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3366bp|location=Sequence derived from alignment at H-elongata_contig9387:1667..4965+ (Himanthalia elongata Himel1 dioecious)back to top |