prot_H-elongata_contig121985.1679.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig121985.1679.1
Unique Nameprot_H-elongata_contig121985.1679.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.080e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0
Query:   20 GLRKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            G RKQLV+MDEVDGMGGSDRGGI ELILLIKK++VPIIAICNDRQH KIR
Sbjct:  564 GFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIR 613          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A0L0HA68_SPIPD (Replication factor C subunit 1 n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HA68_SPIPD)

HSP 1 Score: 82.4 bits (202), Expect = 9.270e-17
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 0
Query:    1 QVLSFSKEGTSGGGSSGCGGLR---KQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            +  S S+ G++       GGLR   +Q+++MDEVDGM G DRGG  ELI LIKKTKVPII ICNDRQ PKI+
Sbjct:  557 EFFSSSENGSTNSNGKKTGGLRTGKRQVLVMDEVDGMSGGDRGGTAELIQLIKKTKVPIICICNDRQSPKIK 628          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: T0RT30_SAPDV (Replication factor C subunit 1 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RT30_SAPDV)

HSP 1 Score: 81.3 bits (199), Expect = 2.350e-16
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    1 QVLSFSKEGTSGGGSSGCGGLRKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            Q LSF       GGS+   GL+K+L++MDEVDGM   DRGG+ ELI +IKK+K PI+ ICNDRQ PK+R
Sbjct:  361 QALSF-------GGSATKMGLKKRLIVMDEVDGMSSGDRGGMAELIAIIKKSKTPIVCICNDRQSPKVR 422          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A507ETD7_9FUNG (BRCT domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ETD7_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 2.370e-16
Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 0
Query:    1 QVLSFSKEGTSGGGSSGCGGLR---KQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            +  S S+ G+        GGLR   +Q+++MDEVDGM G DRGG  ELI LIKKTKVPII ICNDRQ PKI+
Sbjct:  895 EFFSSSENGSINSNGKKAGGLRTGKRQVLVMDEVDGMSGGDRGGSAELIQLIKKTKVPIICICNDRQSPKIK 966          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1E1X5R4_9ACAR (Replication factor C subunit 1 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1X5R4_9ACAR)

HSP 1 Score: 80.9 bits (198), Expect = 3.200e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query:   15 SSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            SSGCG   K ++IMDEVDGM G+ DRGG+ ELI LIK T++PII ICNDR HPK+R
Sbjct:  276 SSGCGMTSKHVLIMDEVDGMAGNEDRGGVQELIALIKTTRIPIICICNDRSHPKMR 331          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1Y2GD29_9FUNG (Replication factor C subunit 1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GD29_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 4.410e-16
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0
Query:   22 RKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            +KQL+IMDEVDGM G DRGGI +LI  IKKT+VPII ICNDRQ PK+R
Sbjct:  585 KKQLIIMDEVDGMAGGDRGGIAQLISFIKKTRVPIICICNDRQSPKVR 632          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A2K6GMT7_PROCO (Replication factor C subunit 1 n=6 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6GMT7_PROCO)

HSP 1 Score: 80.1 bits (196), Expect = 6.030e-16
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0
Query:   14 GSSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            G + C G  K ++IMDEVDGM GS DRGGI ELI LIK TK+PII +CNDR HPKIR
Sbjct:  674 GGAACSGSTKHVLIMDEVDGMAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 730          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1S3EKN1_DIPOR (Replication factor C subunit 1 n=6 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3EKN1_DIPOR)

HSP 1 Score: 79.7 bits (195), Expect = 8.240e-16
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:   11 SGGGSSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            SGG   G  G  K  +IMDEVDGM G+ DRGGI ELI LIK TK+PII +CNDR HPKIR
Sbjct:  707 SGGSGGGASGSTKHALIMDEVDGMAGTEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 766          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A197K2W2_9FUNG (Replication factor C subunit 1 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K2W2_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 1.120e-15
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0
Query:   22 RKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            +KQL+IMDEVDGM G DRGG+ ++I  IKKT+VPII ICNDRQ PK+R
Sbjct:  556 KKQLIIMDEVDGMAGGDRGGVAQMIAFIKKTQVPIICICNDRQSPKVR 603          
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: UPI0018A7B502 (replication factor C subunit 1-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A7B502)

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-15
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   23 KQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 69
            K  ++MDEVDGM G+ DRGG+ ELI LIKK+K+PII +CNDR HPKIR
Sbjct:   52 KHALVMDEVDGMSGNEDRGGVQELITLIKKSKIPIITMCNDRNHPKIR 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND0_ECTSI8.080e-2188.00Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A0L0HA68_SPIPD9.270e-1758.33Replication factor C subunit 1 n=1 Tax=Spizellomyc... [more]
T0RT30_SAPDV2.350e-1657.97Replication factor C subunit 1 n=2 Tax=Saprolegnia... [more]
A0A507ETD7_9FUNG2.370e-1658.33BRCT domain-containing protein n=1 Tax=Spizellomyc... [more]
A0A1E1X5R4_9ACAR3.200e-1667.86Replication factor C subunit 1 (Fragment) n=1 Tax=... [more]
A0A1Y2GD29_9FUNG4.410e-1675.00Replication factor C subunit 1 n=1 Tax=Lobosporang... [more]
A0A2K6GMT7_PROCO6.030e-1668.42Replication factor C subunit 1 n=6 Tax=Lemuriforme... [more]
A0A1S3EKN1_DIPOR8.240e-1666.67Replication factor C subunit 1 n=6 Tax=Heteromyida... [more]
A0A197K2W2_9FUNG1.120e-1570.83Replication factor C subunit 1 n=1 Tax=Linnemannia... [more]
UPI0018A7B5021.500e-1568.75replication factor C subunit 1-like n=1 Tax=Penaeu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 2..69
e-value: 1.6E-12
score: 49.8
NoneNo IPR availablePANTHERPTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18coord: 23..69
NoneNo IPR availablePANTHERPTHR23389:SF6REPLICATION FACTOR C SUBUNIT 1coord: 23..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121985contigH-elongata_contig121985:206..412 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121985.1679.1mRNA_H-elongata_contig121985.1679.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig121985 206..412 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig121985.1679.1 ID=prot_H-elongata_contig121985.1679.1|Name=mRNA_H-elongata_contig121985.1679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
QVLSFSKEGTSGGGSSGCGGLRKQLVIMDEVDGMGGSDRGGIHELILLIK
KTKVPIIAICNDRQHPKIR
back to top