prot_H-elongata_contig9342.16781.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9342.16781.1
Unique Nameprot_H-elongata_contig9342.16781.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length164
Homology
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BLAST of mRNA_H-elongata_contig9342.16781.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.840e-18
Identity = 60/158 (37.97%), Postives = 76/158 (48.10%), Query Frame = 0 
Query:    3 CSGGIDGIEKIGA-CCVETCDVCEFEECGNF--TSSLSKSNCCANTILDSGVSCNTTGEAPCIIDVTPS-----------------------TCSNGGLGIENGMGTVCCPEKCGVCGGSGC---GSIANTTASECCASNIINSGLYCIKGIEAPCIL 131
            CS GI+G++  G  CC   C  C    C      + L+ S+CC   I  SG  C+ TG APCI    P+                       TCSNG  GI++  G VCCP +CG CGGSGC   G+     A  CC+S I +SG +C    EAPCI+
Sbjct:  450 CSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGRIKSSGNYCDDTGVAPCIYGSAPNADDXXXXXXXXXXXXXXXXXXENTCSNGLEGIDH-KGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9342.16781.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIS5_ECTSI5.840e-1837.97FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9342contigH-elongata_contig9342:8309..9398 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9342.16781.1mRNA_H-elongata_contig9342.16781.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9342 8309..9398 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9342.16781.1 ID=prot_H-elongata_contig9342.16781.1|Name=mRNA_H-elongata_contig9342.16781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
AICSGGIDGIEKIGACCVETCDVCEFEECGNFTSSLSKSNCCANTILDSG
VSCNTTGEAPCIIDVTPSTCSNGGLGIENGMGTVCCPEKCGVCGGSGCGS
IANTTASECCASNIINSGLYCIKGIEAPCILVNDVYTPAPSATLSPTDPP
QPIYGRSVFNDIT*
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