prot_H-elongata_contig93365.16780.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig93365.16780.1
Unique Nameprot_H-elongata_contig93365.16780.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
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BLAST of mRNA_H-elongata_contig93365.16780.1 vs. uniprot
Match: A0A6H5K875_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K875_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.460e-14
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:   10 GAKPGQYLGDWGPDSPLWSTQPALASELIPRTLPGMFWMDFEAFLEVFNTMY 61
            GA+PG+YLGDWGP S  WS + A+ASEL+PRTL GMFWM+   FL +FNT+Y
Sbjct:  396 GAEPGEYLGDWGPSSRQWSAR-AVASELLPRTLRGMFWMEMGDFLRMFNTLY 446
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BLAST of mRNA_H-elongata_contig93365.16780.1 vs. uniprot
Match: D8LKI3_ECTSI (Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.770e-12
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:   10 GAKPGQYLGDWGPDSPLWSTQPALASELIPRTLPGMFWMDFEAFL 54
            GA+PG+YLGDWGP S  WS  PALASEL+PRTL GMFWM+   FL
Sbjct:  404 GAEPGEYLGDWGPSSRQWSA-PALASELLPRTLRGMFWMEMGDFL 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93365.16780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K875_9PHAE2.460e-1465.38Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LKI3_ECTSI6.770e-1271.11Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10coord: 2..61
e-value: 1.3E-6
score: 30.0
IPR001300Peptidase C2, calpain, catalytic domainPROSITEPS50203CALPAIN_CATcoord: 1..61
score: 10.007
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 15..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93365contigH-elongata_contig93365:979..1161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93365.16780.1mRNA_H-elongata_contig93365.16780.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig93365 979..1161 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig93365.16780.1 ID=prot_H-elongata_contig93365.16780.1|Name=mRNA_H-elongata_contig93365.16780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
RLLQQGKFFGAKPGQYLGDWGPDSPLWSTQPALASELIPRTLPGMFWMDF
EAFLEVFNTMY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001300Peptidase_C2_calpain_cat
IPR038765Papain-like_cys_pep_sf