mRNA_H-elongata_contig93122.16762.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93122.16762.1
Unique NamemRNA_H-elongata_contig93122.16762.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93122.16762.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.390e-16
Identity = 42/138 (30.43%), Postives = 85/138 (61.59%), Query Frame = 2 
Query:  191 NLASTLQANHIGMFKIPLKNVTCTSHVRQVNERGVKTVLESIEKKGWLDHCAPAVVIEREAL-EGGEFTEKSALGHDFQVLDGNHRITAAKRLWGGDHLVSCRVYYALPASVTKIVAD--RECAINLLHLSVFGCLYF 595
            ++++ L  +++G FK+ L N+TCT  VR +++ G++ +  SI++ GW++  AP+VVI+R+ L +  E T ++AL      LDGNHR+T  K+++G   +   RVY     +  +++A+   +   +++  +++  +YF
Sbjct:    8 DMSAVLSKHYLGEFKMRLCNITCTEMVRPLSQNGLQHLERSIQEVGWIESFAPSVVIQRDHLGDSRELTAEAALTAPAHTLDGNHRVTTLKKMYGESGVFLVRVYLEFNQADERLIANALNDATESVVQPTLYDKVYF 145
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BLAST of mRNA_H-elongata_contig93122.16762.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.150e-15
Identity = 41/138 (29.71%), Postives = 84/138 (60.87%), Query Frame = 2 
Query:  191 NLASTLQANHIGMFKIPLKNVTCTSHVRQVNERGVKTVLESIEKKGWLDHCAPAVVIEREAL-EGGEFTEKSALGHDFQVLDGNHRITAAKRLWGGDHLVSCRVYYALPASVTKIVAD--RECAINLLHLSVFGCLYF 595
            ++++ L  +++G F + L N+TCT  VR +++ G++ +  SI++ GW++  AP+VVI+R+ L +  E T ++AL      LDGNHR+T  K+++G   +   RVY     +  +++A+   +   +++  +++  +YF
Sbjct:    8 DMSAVLSKHYLGEFMMRLCNITCTEMVRPLSQNGLQHLERSIQEVGWIESFAPSVVIQRDHLGDSRELTAEAALTAPAHTLDGNHRVTTLKKMYGESGVFLVRVYLEFNQADERLIANALNDATQSVVQRTLYDKVYF 145
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BLAST of mRNA_H-elongata_contig93122.16762.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.060e-12
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 2 
Query:  188 INLASTLQANHIGMFKIPLKNVTCTSHVRQVNERGVKTVLESIEKKGWLDHCAPAVVIEREALEGGEFTEKSALGHDFQVLDGNHRITAAKRLWGGD--HLVSCRVYYALPASVTKIVADREC 550
            +++AS L+   +G+++IPL N+  T H RQ +   V  ++ SI + GW+    P V +  E  +G   T + A      VLDGNHR+ AAK ++GGD    + C  Y  +    TK +    C
Sbjct:   42 VHVASVLKDLELGVWEIPLANIRFTEHCRQRSPAAVTAIVASITEMGWMPTAVPQVTLP-EVQKGQVMTAELAATMTAYVLDGNHRLLAAKEVYGGDLKKTIKCACYRDITCPYTKKIVSDAC 163
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BLAST of mRNA_H-elongata_contig93122.16762.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.460e-8
Identity = 40/127 (31.50%), Postives = 70/127 (55.12%), Query Frame = 2 
Query:  227 MFKIPLKNVTCTSHVRQVNERGVKTVLESIEKKGWLDHCAPAVVIEREALEGGEFTEKSA-LGHDFQVLDGNHRITAAKRLWGGDHLVSCRVYYALP-ASVTKIVAD--RECAINLLHLSVFGCLYF 595
            M  I L+ +  TSH RQ++++ VK + +SI+ + ++++   +V+ +   +    FT++ A       VLDGNHR+ A K +  GD LV C+ Y  +  A+V +IVAD   +        +++  LYF
Sbjct:    1 MHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMENQPLSVIFK--GVHQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYF 125
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BLAST of mRNA_H-elongata_contig93122.16762.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.770e-6
Identity = 39/134 (29.10%), Postives = 64/134 (47.76%), Query Frame = 2 
Query:  206 LQANHIGMFKIPLKNVTCTSHVRQVNERGVKTVLESIEKKGWLDHCAPAVVIEREALEGGEF-TEKSALGHDFQVLDGNHRITAAKRLWGGDHLVSCRVYYALP-ASVTKIVAD--RECAINLLHLSVFGCLYF 595
            L+   +GM  I L+ +  TSH RQ+++R VK + +SI+ + +++H  PA   + +      F T         Q L       A K +  GD LV C+ Y  +  A+V +IVAD   +        +++  LYF
Sbjct:   66 LKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYF 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93122.16762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KC60_9PHAE8.390e-1630.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE5.150e-1529.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK41_9PHAE3.060e-1233.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN26_9PHAE2.460e-831.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G124_ECTSI3.770e-629.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93122contigH-elongata_contig93122:759..1517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size759
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93122.16762.1prot_H-elongata_contig93122.16762.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93122 871..1359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.7857041-UTR-H-elongata_contig93122:758..8701622931328.7857041-UTR-H-elongata_contig93122:758..870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93122 759..870 +
1691679792.1706254-UTR-H-elongata_contig93122:758..8701691679792.1706254-UTR-H-elongata_contig93122:758..870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93122 759..870 +
1622931328.8166683-UTR-H-elongata_contig93122:1359..15171622931328.8166683-UTR-H-elongata_contig93122:1359..1517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93122 1360..1517 +
1691679792.1867867-UTR-H-elongata_contig93122:1359..15171691679792.1867867-UTR-H-elongata_contig93122:1359..1517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93122 1360..1517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.8025537-CDS-H-elongata_contig93122:870..13591622931328.8025537-CDS-H-elongata_contig93122:870..1359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93122 871..1359 +
1691679792.1787796-CDS-H-elongata_contig93122:870..13591691679792.1787796-CDS-H-elongata_contig93122:870..1359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93122 871..1359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93122.16762.1

>prot_H-elongata_contig93122.16762.1 ID=prot_H-elongata_contig93122.16762.1|Name=mRNA_H-elongata_contig93122.16762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MAQSSVSQTSTLSAGSTVVMETSPKINLASTLQANHIGMFKIPLKNVTCT
SHVRQVNERGVKTVLESIEKKGWLDHCAPAVVIEREALEGGEFTEKSALG
HDFQVLDGNHRITAAKRLWGGDHLVSCRVYYALPASVTKIVADRECAINL
LHLSVFGCLYFA*
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mRNA from alignment at H-elongata_contig93122:759..1517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93122.16762.1 ID=mRNA_H-elongata_contig93122.16762.1|Name=mRNA_H-elongata_contig93122.16762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig93122:759..1517+ (Himanthalia elongata Himel1 dioecious)
TATACACAGGTAGTTAGGTTAGCAAAGAAAACATGCATGCATCACGCTTA
CACTCCTTAATAATACTTTCCTACATTCAACGTGTTCATGCCGAGGGTCC
CAACATAAAGTTATGGCACAATCCTCTGTATCGCAGACATCCACCCTGAG
TGCTGGCTCCACGGTTGTTATGGAAACATCACCCAAAATCAATCTTGCTT
CTACACTGCAAGCCAACCATATCGGGATGTTTAAAATCCCGCTCAAAAAT
GTCACATGTACATCTCACGTCCGTCAAGTTAACGAACGAGGCGTAAAGAC
TGTCCTGGAATCGATCGAAAAAAAAGGATGGTTAGACCACTGCGCTCCTG
CAGTGGTCATTGAACGGGAGGCCCTAGAAGGCGGAGAGTTCACGGAAAAG
TCAGCCTTGGGCCACGACTTTCAGGTGCTGGACGGGAACCATCGGATAAC
AGCAGCTAAGAGGCTCTGGGGAGGCGACCATCTCGTCTCATGCCGAGTTT
ATTACGCCTTACCAGCGAGCGTCACCAAGATTGTTGCCGATCGTGAGTGT
GCCATAAATCTTCTACATCTATCTGTATTTGGTTGTCTTTACTTTGCCTG
ATATTTGAACTTGCACGGGTGTATATCCCATTTTTAACAAGCACACAAAG
CCGGCATCCTCATGTTCTCTACCAGTCATTCAGGCAAGCACATAGCTATT
CGAAGAGCGTGATATGTTTCTGTTCATTGGGTTCAAGTAATAAAAGCGTG
TTGTACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig93122:759..1517+

>mRNA_H-elongata_contig93122.16762.1 ID=mRNA_H-elongata_contig93122.16762.1|Name=mRNA_H-elongata_contig93122.16762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig93122:759..1517+ (Himanthalia elongata Himel1 dioecious)
ATGGCACAATCCTCTGTATCGCAGACATCCACCCTGAGTGCTGGCTCCAC
GGTTGTTATGGAAACATCACCCAAAATCAATCTTGCTTCTACACTGCAAG
CCAACCATATCGGGATGTTTAAAATCCCGCTCAAAAATGTCACATGTACA
TCTCACGTCCGTCAAGTTAACGAACGAGGCGTAAAGACTGTCCTGGAATC
GATCGAAAAAAAAGGATGGTTAGACCACTGCGCTCCTGCAGTGGTCATTG
AACGGGAGGCCCTAGAAGGCGGAGAGTTCACGGAAAAGTCAGCCTTGGGC
CACGACTTTCAGGTGCTGGACGGGAACCATCGGATAACAGCAGCTAAGAG
GCTCTGGGGAGGCGACCATCTCGTCTCATGCCGAGTTTATTACGCCTTAC
CAGCGAGCGTCACCAAGATTGTTGCCGATCGTGAGTGTGCCATAAATCTT
CTACATCTATCTGTATTTGGTTGTCTTTACTTTGCCTGAATGGCACAATC
CTCTGTATCGCAGACATCCACCCTGAGTGCTGGCTCCACGGTTGTTATGG
AAACATCACCCAAAATCAATCTTGCTTCTACACTGCAAGCCAACCATATC
GGGATGTTTAAAATCCCGCTCAAAAATGTCACATGTACATCTCACGTCCG
TCAAGTTAACGAACGAGGCGTAAAGACTGTCCTGGAATCGATCGAAAAAA
AAGGATGGTTAGACCACTGCGCTCCTGCAGTGGTCATTGAACGGGAGGCC
CTAGAAGGCGGAGAGTTCACGGAAAAGTCAGCCTTGGGCCACGACTTTCA
GGTGCTGGACGGGAACCATCGGATAACAGCAGCTAAGAGGCTCTGGGGAG
GCGACCATCTCGTCTCATGCCGAGTTTATTACGCCTTACCAGCGAGCGTC
ACCAAGATTGTTGCCGATCGTGAGTGTGCCATAAATCTTCTACATCTATC
TGTATTTGGTTGTCTTTACTTTGCCTGA
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