prot_H-elongata_contig9283.16733.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9283.16733.1
Unique Nameprot_H-elongata_contig9283.16733.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length76
Homology
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BLAST of mRNA_H-elongata_contig9283.16733.1 vs. uniprot
Match: UPI00165B50D5 (uncharacterized protein LOC110367566 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165B50D5)

HSP 1 Score: 51.6 bits (122), Expect = 8.800e-6
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 0 
Query:   13 GDPPRLVIPRSLIPGVLALVHST--YGHSRVRRTTALLQKHYSWPALTWDAKEYLLPCCCC 71
            G P +  +P S+ P VL   HST  + H   RRT+ L+ +H+ WP+L  D +EY L C  C
Sbjct:  743 GPPGKTYVPSSVRPQVLHWFHSTKLFAHPGSRRTSTLITRHFWWPSLYKDVREYTLACPTC 803
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BLAST of mRNA_H-elongata_contig9283.16733.1 vs. uniprot
Match: A0A8C1HMJ0_CYPCA (Integrase catalytic domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HMJ0_CYPCA)

HSP 1 Score: 50.8 bits (120), Expect = 1.600e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 0 
Query:   17 RLVIPRSLIPGVLALVHSTYGHSRVRRTTALLQKHYSWPALTWDAKEYLLPC 68
            ++V+P SL P VL L+H  +GH  V RTT L+Q+   WP LT D  ++   C
Sbjct:   93 QVVLPSSLRPEVLMLLHQEHGHQGVERTTELVQQRCYWPGLTADVAQWCREC 144
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BLAST of mRNA_H-elongata_contig9283.16733.1 vs. uniprot
Match: A0A8C1F3D0_CYPCA (Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1F3D0_CYPCA)

HSP 1 Score: 50.8 bits (120), Expect = 1.630e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 0 
Query:   17 RLVIPRSLIPGVLALVHSTYGHSRVRRTTALLQKHYSWPALTWDAKEYLLPC 68
            ++V+P SL P VL L+H  +GH  V RTT L+Q+   WP LT D  ++   C
Sbjct:  491 QVVLPSSLRPEVLMLLHQEHGHQGVERTTELVQQRCYWPGLTADVAQWCREC 542
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BLAST of mRNA_H-elongata_contig9283.16733.1 vs. uniprot
Match: A0A8C2FG16_CYPCA (Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FG16_CYPCA)

HSP 1 Score: 50.8 bits (120), Expect = 1.640e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 0 
Query:   17 RLVIPRSLIPGVLALVHSTYGHSRVRRTTALLQKHYSWPALTWDAKEYLLPC 68
            ++V+P SL P VL L+H  +GH  V RTT L+Q+   WP LT D  ++   C
Sbjct:  868 QVVLPSSLRPEVLMLLHQEHGHQGVERTTELVQQRCYWPGLTADVAQWCREC 919
[Close]
BLAST of mRNA_H-elongata_contig9283.16733.1 vs. uniprot
Match: A0A8C1TWV1_CYPCA (Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1TWV1_CYPCA)

HSP 1 Score: 50.8 bits (120), Expect = 1.650e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 0 
Query:   17 RLVIPRSLIPGVLALVHSTYGHSRVRRTTALLQKHYSWPALTWDAKEYLLPC 68
            ++V+P SL P VL L+H  +GH  V RTT L+Q+   WP LT D  ++   C
Sbjct:  868 QVVLPSSLRPEVLMLLHQEHGHQGVERTTELVQQRCYWPGLTADVAQWCREC 919
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9283.16733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI00165B50D58.800e-640.98uncharacterized protein LOC110367566 n=1 Tax=Fundu... [more]
A0A8C1HMJ0_CYPCA1.600e-544.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A8C1F3D0_CYPCA1.630e-544.23Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 ... [more]
A0A8C2FG16_CYPCA1.640e-544.23Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 ... [more]
A0A8C1TWV1_CYPCA1.650e-544.23Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.70coord: 1..74
e-value: 2.5E-8
score: 36.0
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 20..71
e-value: 8.1E-10
score: 38.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9283contigH-elongata_contig9283:179..406 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9283.16733.1mRNA_H-elongata_contig9283.16733.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9283 179..406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9283.16733.1 ID=prot_H-elongata_contig9283.16733.1|Name=mRNA_H-elongata_contig9283.16733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
LEDRGLLWKARAGDPPRLVIPRSLIPGVLALVHSTYGHSRVRRTTALLQK
HYSWPALTWDAKEYLLPCCCCWSHI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041588Integrase_H2C2