mRNA_H-elongata_contig9263.16717.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: D7FNX7_ECTSI (TatD DNase domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX7_ECTSI) HSP 1 Score: 185 bits (469), Expect = 2.790e-56 Identity = 89/131 (67.94%), Postives = 109/131 (83.21%), Query Frame = 1
Query: 1 VVDLCARVNCDPRH--RIRLHPSLGMHPAKANMAALNDMLGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGKPK 387
VV+LCA +N D ++RLHPS+GMHP KA++ ++D+L LID HA+++ CVGEVGLD+SRHLIGE+G + ERAKEVQRE F RQARRA +LGLAVNVHSR+AGHHAI LL++EGI RAV HAFDGKPK
Sbjct: 45 VVELCASINDDASRCRKLRLHPSIGMHPEKADLHKVDDVLELIDKHADTIVCVGEVGLDFSRHLIGESGGERAERAKEVQREVFRRQARRAKELGLAVNVHSRSAGHHAISLLQEEGITRAVLHAFDGKPK 175
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: A0A6H5KIS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS3_9PHAE) HSP 1 Score: 184 bits (468), Expect = 2.980e-55 Identity = 89/131 (67.94%), Postives = 109/131 (83.21%), Query Frame = 1
Query: 1 VVDLCARVNCDPRH--RIRLHPSLGMHPAKANMAALNDMLGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGKPK 387
VV+LCA +N D ++RLHPS+GMHP KA++ ++D+L LID HA+++ CVGEVGLD+SRHLIGE+G + ERAKEVQRE F RQARRA +LGLAVNVHSR+AGHHAI LL++EGI RAV HAFDGKPK
Sbjct: 90 VVELCASINDDASRCRKLRLHPSIGMHPEKADVHKVDDVLELIDKHADTIVCVGEVGLDFSRHLIGESGGERAERAKEVQREVFRRQARRAKELGLAVNVHSRSAGHHAISLLQEEGITRAVLHAFDGKPK 220
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: A0A0L0G503_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G503_9EUKA) HSP 1 Score: 112 bits (279), Expect = 3.280e-28 Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 49 RLHPS-----LGMHPAKANMAALNDMLGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGKPK 387
RLH S +G+HP +AN+ L D+L LI +A L +GE GLD++ ++G G ++ K++QR F QA + +L L +NVHSR AGHHAI LLK+ G+KR V HAFDGKPK
Sbjct: 15 RLHSSTVKACIGLHPTEANLEILPDVLALIRKNAHDLVGIGECGLDFTPKVLGNDG----DKVKQIQRHVFAAQAALSVELDLPLNVHSRCAGHHAISLLKEAGVKRCVLHAFDGKPK 128
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: A0A7S2UWP9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP9_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.120e-26 Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 58 PSLGMHPAKANMAALNDMLGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGK 381
PS+G+HP AN++ L ++ I + + LA VGEVGLDYS H++GE A E K +QRE F++Q +A +L L +NVHSRAAGHH + LL++ G R V HAFDG+
Sbjct: 72 PSVGLHPEFANISDLPTIITQITQYHDQLASVGEVGLDYSPHILGEGEA---EERKAIQREVFSQQVLKAVELDLPLNVHSRAAGHHTLDLLRELGATRVVMHAFDGR 176
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: I2CPC6_NANGC (Dnase domain containing 3 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CPC6_NANGC) HSP 1 Score: 107 bits (267), Expect = 8.730e-26 Identity = 64/156 (41.03%), Postives = 86/156 (55.13%), Query Frame = 1
Query: 1 VVDLCARVNCDP-RHRIRLHPSLGMHPAKANMAALNDMLGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKD--------------------------EGIKRAVFHAFDGKPK 387
V D +N P ++ +RLH SLG+HP A + +L+ +L LI + LACVGE+GLD+S H++G A+A K +QREC +Q A +L L VNVHSR AGHHA+ LL++ EG RAV HA+DGK K
Sbjct: 39 VRDAALVLNLPPCQNGVRLHKSLGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAV---KALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAK 191
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: A0A8C4ZJW8_GADMO (TatD DNase domain containing 3 n=3 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZJW8_GADMO) HSP 1 Score: 94.7 bits (234), Expect = 4.360e-21 Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 52 LHPSLGMHPAKANM------AALNDM---LGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGKP 384
+ P LG+HP + + +L D+ L LI+ + E L +GEVGLD++ + E GA K++QR+ RQA A L L +NVHSR+AG I+LLK++G+++A+ HAFDGKP
Sbjct: 59 IFPCLGVHPVQQTVPTVQRCVSLQDLDAALPLIEKYEEHLVAIGEVGLDFTPRFVSEEGA------KDIQRQVLVRQAELAKRLDLPLNVHSRSAGRPTIQLLKEQGVEKALLHAFDGKP 172
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: A0A383WPV6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPV6_TETOB) HSP 1 Score: 94.4 bits (233), Expect = 1.060e-20 Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 88 NMAALNDMLGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGK 381
+++ ++ +L I HA L VGEVGLD+S H++G+ ++ +R ++VQRE F +Q + A++LGL VNVHSR+AGH+AI L + A+ HAFDGK
Sbjct: 84 DVSEVSPVLAFIRKHASELVAVGEVGLDFSPHVVGKVHSEEEQRLRDVQREVFKQQIQLANELGLPVNVHSRSAGHYAIDTLIECNAGGALLHAFDGK 181
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: UPI0018653474 (tatD DNase domain containing 3-like isoform X1 n=2 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018653474) HSP 1 Score: 92.4 bits (228), Expect = 3.370e-20 Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 52 LHPSLGMHPAKANMAALNDM---LGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGKP 384
+HP G+ P A L D+ L LI+ H + L +GEVGLD++ + ++++ KE QRE RQA A L L +NVHSR+AG I LLK++G+++A+ HAFDGKP
Sbjct: 65 VHPVQGVPPEPQRGATLEDLDAALPLIEKHKDRLLAIGEVGLDFTPRFL------SSDKGKEEQREVLIRQAEIAKRLDLPLNVHSRSAGRPTIHLLKEQGVEKALLHAFDGKP 172
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: A0A3B3TAG7_9TELE (Putative deoxyribonuclease TATDN3 n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3TAG7_9TELE) HSP 1 Score: 92.0 bits (227), Expect = 4.640e-20 Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 52 LHPSLGMHPAKANMAALNDM---LGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGKP 384
+HP G+HP + D+ L LI+ + + L +GEVGLD++ ++ +E KE QR RQA A L L +NVHSR+AG I LLK++G+++A+ HAFDGKP
Sbjct: 65 IHPVQGIHPEEQRGVTFQDLDAALPLIEKYKDQLLAIGEVGLDFTPRIVN------SETGKEEQRRVLIRQAEIAKQLDLPLNVHSRSAGRPTIHLLKEQGVQKALLHAFDGKP 172
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Match: A0A7J7QD42_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QD42_9CHLO) HSP 1 Score: 92.0 bits (227), Expect = 1.220e-19 Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1
Query: 88 NMAALNDMLGLIDAHAESLACVGEVGLDYSRHLIGEAGADATERAKEVQRECFTRQARRADDLGLAVNVHSRAAGHHAIRLLKDEGIKRAVFHAFDGK 381
+++ + +L I HA L VGEVGLD+S H+IG+ ++ +R +EVQ+E F +Q A++LGL VNVHSR+AGH+A+ L A+ HAFDGK
Sbjct: 8 DVSEVTPVLDFIQRHAAELVAVGEVGLDFSPHVIGKVHSEDEQRLREVQQEVFKQQILLANELGLPVNVHSRSAGHYAVDTLIQCNASGALLHAFDGK 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9263.16717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9263.16717.1 >prot_H-elongata_contig9263.16717.1 ID=prot_H-elongata_contig9263.16717.1|Name=mRNA_H-elongata_contig9263.16717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp VVDLCARVNCDPRHRIRLHPSLGMHPAKANMAALNDMLGLIDAHAESLACback to top mRNA from alignment at H-elongata_contig9263:96..713- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9263.16717.1 ID=mRNA_H-elongata_contig9263.16717.1|Name=mRNA_H-elongata_contig9263.16717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig9263:96..713- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9263:96..713- >mRNA_H-elongata_contig9263.16717.1 ID=mRNA_H-elongata_contig9263.16717.1|Name=mRNA_H-elongata_contig9263.16717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig9263:96..713- (Himanthalia elongata Himel1 dioecious)back to top |