prot_H-elongata_contig92611.16715.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig92611.16715.1
Unique Nameprot_H-elongata_contig92611.16715.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length234
Homology
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7B9E1_9LAMI (Uncharacterized protein n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B9E1_9LAMI)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-6
Identity = 58/194 (29.90%), Postives = 92/194 (47.42%), Query Frame = 0
Query:   48 LRQQQDSKAMSASKGTL------------TVNRGK----GKNRRHHSKSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPAIPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLL 225
            LR ++D++ +S SKGT               ++GK    GK++    K  G+C+NCGK  H A+DCR  + +     KK+ +G +    LT   V  + E+  +A   EA+  D   +W  D+GAT  +    A  S Y    P    ++  GN +  D  G  +V L   S   K + + DV +VP + +NL+
Sbjct:  164 LRIEEDNRKLSESKGTKRPIEDRSNLVEPNASKGKRKFKGKDKGKGKKFKGTCYNCGKPNHMAKDCRRPKKA-----KKEQQGKDVANHLTTSNVVDM-EMDLVAVTFEANMVDNPRQWWVDTGATRHICSEKAMFSTYV---PVTGRKLFMGNSVSSDVAGIGKVVLKMTSR--KELALIDVLHVPEIRKNLV 346          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-6
Identity = 44/155 (28.39%), Postives = 67/155 (43.23%), Query Frame = 0
Query:   79 KSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPAIPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLLFSIKAVDQ 233
            KSD  C  C KK H  R+CR     G     +KG+                  V   + + EAS      +W  D+GAT  ++ T      Y+  +   +++ A   IL  +G G IE       +   ++++ DV YVPG+SRNL   + A D+
Sbjct:  238 KSDDFCHYCKKKGHWLRECRKWLADGKPSRFQKGK-------------IGFSNVALQSIIDEASSVSTDIDWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAAHDR 379          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7AVM8_9LAMI (CCHC-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AVM8_9LAMI)

HSP 1 Score: 58.2 bits (139), Expect = 2.860e-6
Identity = 46/148 (31.08%), Postives = 70/148 (47.30%), Query Frame = 0
Query:   79 KSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPA-IPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLL 225
            K  G+C+NCGK  H A+DCR+ +      DK + RG  +  ++   +VP  + E+   A + EA+  D   EW  D+GAT  +       S+Y   S      +  GN    D  G   V L   S   K V + +V +VP + +NL+
Sbjct:  246 KFKGTCYNCGKPNHMAKDCRLPKK-----DKSQNRG--QANVVQDRSVPIDLSEIDLFAVVFEANLVDNPREWWVDTGATSHICSEKGMFSSYTAVSDRT---LYMGNSTTSDAVGIGNVVLKMTSG--KEVNLKNVLHVPDIRKNLV 381          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7B1L8_9LAMI (CCHC-type domain-containing protein n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B1L8_9LAMI)

HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6
Identity = 54/194 (27.84%), Postives = 91/194 (46.91%), Query Frame = 0
Query:   48 LRQQQDSKAMSASKGTL------------TVNRGK----GKNRRHHSKSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPAIPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLL 225
            LR ++D++ +S SKGT               ++GK    GK++    K  G+C+NCGK  H A+DCR    +     KK+ +G +    LT   V  + E+   A   EA+  D   +W  D+GAT  +    A  S Y   + G  + + +     V G G++ + +     + K + + DV +VP + +NL+
Sbjct:  164 LRIEEDNRKLSESKGTKRPIEDGSNLVEPNASKGKRKFKGKDKGKGKKFKGTCYNCGKPNHMAKDCRRPNKA-----KKEQQGKDVANHLTTSNVVDM-EMDLAAVTFEANMVDNPRQWWVDTGATRHICSEKAMFSTYVPVT-GRKLFMENSASSDVAGIGKVVLKMT----SRKELALIDVLHVPEIRKNLV 346          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7B395_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B395_9LAMI)

HSP 1 Score: 57.4 bits (137), Expect = 6.070e-6
Identity = 46/148 (31.08%), Postives = 71/148 (47.97%), Query Frame = 0
Query:   79 KSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPA-IPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLL 225
            K  G+C+NCGK  H A+DCR+ +      DK + RG  +  ++   +VP  + E+   A + EA+  D   EW  D+GAT  +       S+Y   S     ++  GN    D  G   V L   S   K V + +V +VP + +NL+
Sbjct:  246 KFKGTCYNCGKPNHMAKDCRLPKK-----DKSQNRG--QANVVQDRSVPIDLSEIDLSAVVFEANLVDNPREWWVDTGATSHICSEKGMFSSYTAVSDR---KLYMGNSTTSDVVGIGNVVLKMTSG--KEVNLKNVLHVPDIRKNLV 381          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7A640_9LAMI (Uncharacterized protein n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7A640_9LAMI)

HSP 1 Score: 57.4 bits (137), Expect = 6.370e-6
Identity = 46/148 (31.08%), Postives = 70/148 (47.30%), Query Frame = 0
Query:   79 KSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPA-IPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLL 225
            K  G+C+NCGK  H A+DCR+ +       K + RG  +  ++   +VP  + E+   A + EA+  D   EW  D+GAT  +       S+Y   S     ++  GN    D  G   V L   S   K V + DV +VP + +NL+
Sbjct:  213 KFKGTCYNCGKPNHMAKDCRLPKNG-----KSQNRG--QANVVQDRSVPIDLSEIDLSAVVFEANLVDNPREWWVDTGATSHICSEKGMFSSYTAVSDR---KLYMGNSTTSDVVGIGNVVLKMTSG--KEVNLKDVLHVPDIRKNLV 348          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7C5M8_9LAMI (Uncharacterized protein (Fragment) n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C5M8_9LAMI)

HSP 1 Score: 57.4 bits (137), Expect = 6.750e-6
Identity = 46/148 (31.08%), Postives = 71/148 (47.97%), Query Frame = 0
Query:   79 KSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPA-IPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLL 225
            K  G+C+NCGK  H A+DCR+ +      DK + RG  +  ++   +VP  + E+   A + EA+  D   EW  D+GAT  +       S+Y   S     ++  GN    D  G   V L   S   K V + +V +VP + +NL+
Sbjct:  214 KFKGTCYNCGKPNHMAKDCRLPKK-----DKSQNRG--QANVVQDRSVPIDLSEIDLSAVVFEANLVDNPREWWVDTGATSHICSEKGMFSSYTAVSDR---KLYMGNSTTSDVVGIGNVVLKMTSG--KEVNLKNVLHVPDIRKNLV 349          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7CHV1_9LAMI (CCHC-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CHV1_9LAMI)

HSP 1 Score: 56.2 bits (134), Expect = 9.790e-6
Identity = 57/194 (29.38%), Postives = 89/194 (45.88%), Query Frame = 0
Query:   48 LRQQQDSKAMSASKGTL------------TVNRGK----GKNRRHHSKSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPAIPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLL 225
            LR ++D++  S SKGT               ++GK    GK++    K  G+C+NCGK  H A+DCR  + +     KK+ +G +    LT   V  + ++   A   EA+  D   +W  D+GAT  +    A  S Y    P    ++  GN    D  G  +V L   S   K + + DV +VP + +NL+
Sbjct:  102 LRIEEDNRKQSESKGTKRPIEDGSNLVEPNASKGKRKFKGKDKGKGKKFKGTCYNCGKPNHMAKDCRRPKKA-----KKEQQGKDVANHLTTSNVVDM-DMDLAAVTFEANMVDNPRQWWVDTGATRHICSEKAMFSTYV---PFTGRKLFMGNSASSDVAGIGKVVLKMTSR--KELALIDVLHVPEIRKNLV 284          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7CZZ7_9LAMI (CCHC-type domain-containing protein n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CZZ7_9LAMI)

HSP 1 Score: 55.8 bits (133), Expect = 1.210e-5
Identity = 53/198 (26.77%), Postives = 92/198 (46.46%), Query Frame = 0
Query:   48 LRQQQDSKAMSASKGTL------------TVNRGK----GKNRRHHSKSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPAIPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLLFSIK 229
            LR ++D++ +S SKGT               ++GK    GK++    K  G+C+NCGK  H A+DCR  + +     KK+ +G +    LT   V  + E+   A   EA+  D   +W  D+GAT  +    A  S Y   + G  + + +     V G G++ + +     + K + + DV +VP + +    ++K
Sbjct:  102 LRIEEDNRKLSESKGTKRPIEDGSNLVEPNSSKGKRKFKGKDKGKGKKFKGTCYNCGKPNHMAKDCRRPKKA-----KKEHQGKDVANHLTTSNVVDM-EMDLAAVTFEANMVDNPRQWWVDTGATRHICSEKAMFSTYVSVT-GRKLFMGNSASSDVAGIGKVVLKMT----SRKELALIDVLHVPEIRKKEYINLK 288          
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Match: A0A2Z7AVV8_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AVV8_9LAMI)

HSP 1 Score: 54.3 bits (129), Expect = 5.830e-5
Identity = 54/201 (26.87%), Postives = 92/201 (45.77%), Query Frame = 0
Query:   48 LRQQQDSKAMSASKGTL------------TVNRGK----GKNRRHHSKSDGSCFNCGKKVHHARDCRMSETSGATDDKKKGRGVEKGTMLTKLTVPAIPEVGTMAAMAEASRGDRKEEWKSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLDQPSHTTKRVKMNDVAYVPGLSRNLLFSIKAVD 232
            LR ++D++  S SKGT               ++GK    GK++    K  G+C+NCGK  H A+D R  + +     KK+ +G +    LT   V  + E+   A   E +  D   +W  D+GAT  +    A  S Y   + G  + + +     V G G++ + +     + K + + DV +VP + +NL+ S   V+
Sbjct:  164 LRIEEDNRKQSESKGTKRPIEDGSNLVEPNASKGKRKFKGKDKGKGKKFKGTCYNCGKSNHMAKDYRRPKKA-----KKEQQGKDVANHLTTSNVVDM-EMDLAAVTFEVNMVDNPRQWWVDTGATRHICSEKAMFSTYVPVT-GRKLFMGNSASSDVAGIGKVVLKMT----SRKELALIDVLHVPEIRKNLVASTYIVE 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92611.16715.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2Z7B9E1_9LAMI1.100e-629.90Uncharacterized protein n=2 Tax=Dorcoceras hygrome... [more]
A0A4C1TCT1_EUMVA1.230e-628.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7AVM8_9LAMI2.860e-631.08CCHC-type domain-containing protein n=1 Tax=Dorcoc... [more]
A0A2Z7B1L8_9LAMI3.010e-627.84CCHC-type domain-containing protein n=2 Tax=Dorcoc... [more]
A0A2Z7B395_9LAMI6.070e-631.08Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A2Z7A640_9LAMI6.370e-631.08Uncharacterized protein n=2 Tax=Dorcoceras hygrome... [more]
A0A2Z7C5M8_9LAMI6.750e-631.08Uncharacterized protein (Fragment) n=2 Tax=Dorcoce... [more]
A0A2Z7CHV1_9LAMI9.790e-629.38CCHC-type domain-containing protein n=1 Tax=Dorcoc... [more]
A0A2Z7CZZ7_9LAMI1.210e-526.77CCHC-type domain-containing protein n=2 Tax=Dorcoc... [more]
A0A2Z7AVV8_9LAMI5.830e-526.87Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 64..119
e-value: 8.2E-6
score: 27.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 84..98
score: 9.373
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 69..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92611contigH-elongata_contig92611:480..1286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92611.16715.1mRNA_H-elongata_contig92611.16715.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig92611 480..1286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig92611.16715.1 ID=prot_H-elongata_contig92611.16715.1|Name=mRNA_H-elongata_contig92611.16715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
TRLRKCVIIVSGISADYEMEYRVLKNNPVSLNSADIEYVVGDQYIRLLRQ
QQDSKAMSASKGTLTVNRGKGKNRRHHSKSDGSCFNCGKKVHHARDCRMS
ETSGATDDKKKGRGVEKGTMLTKLTVPAIPEVGTMAAMAEASRGDRKEEW
KSDSGATYQMSHTLAGMSAYKKASPGMTVEIADGNILPVDGFGRIEVYLD
QPSHTTKRVKMNDVAYVPGLSRNLLFSIKAVDQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf