mRNA_H-elongata_contig91864.16641.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91864.16641.1
Unique NamemRNA_H-elongata_contig91864.16641.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig91864.16641.1 vs. uniprot
Match: J9LE10_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LE10_ACYPI)

HSP 1 Score: 71.6 bits (174), Expect = 7.150e-12
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 1 
Query:    1 RSKELVFATWNVRTMSERGTNGPGHAEDLLMFAAKYECDFIAIQETRRDGKTTIQAPATGYVVH--CSGHCDGGLGDVQVLGP-YGR----DTLNDNGSRLLACATEQKLPIVNTLFSTPKRGGNSDAFTHEGPKELHRWRLDYILVRQ 426
            R ++L+F TWNVRTM +     PG A  ++    KY+   +A+QETR   + TI    T  +++  C+     G+G  Q L P  G+    +T NDNG +L+  AT +   I++T+F  P +  N    T   P   H  ++D+IL+ +
Sbjct:   40 RKQDLLFGTWNVRTMFQ-----PGTAISVVKEIEKYKIKIVALQETRWSDEGTIDINDTAAILYDKCNERRQFGIGKEQFLKPTIGKYRLHETTNDNGMKLIDLATGKGFRIMSTMF--PYK--NIHKSTRRSPDGQHVNQIDHILMNE 179
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BLAST of mRNA_H-elongata_contig91864.16641.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 9.310e-9
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:  214 GLGDVQVLGPYGRDTLNDNGSRLLACATEQKLPIVNTLFSTPKRGGNSDAFTHEGPKELHRWRLDYILVRQ 426
            G  D +++G YGRD++N+NG RLL  A++ +L + NT F TPK G      T +   +  ++ LD+IL+RQ
Sbjct:   91 GCCDAKIMGAYGRDSMNNNGERLLGPASDNQLSLTNTYFRTPKGGVQH---TFQSSNKGKKYHLDFILMRQ 158
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BLAST of mRNA_H-elongata_contig91864.16641.1 vs. uniprot
Match: A0A654HQ13_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HQ13_9CEST)

HSP 1 Score: 55.5 bits (132), Expect = 3.620e-6
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:  232 VLGPYGRDTLNDNGSRLLACATEQKLPIVNTLFSTPKRGGNSDAFTHEGPKELHRWRLDYILVRQ 426
            VLGP+GR+ LNDNG  LL    EQ+L + NT F  P +     A+ H   ++ H   LDY+LVR+
Sbjct:  406 VLGPHGRNGLNDNGLLLLRTCAEQRLILTNTFFRLPMQ--EETAWMHPRSRQWHL--LDYVLVRR 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91864.16641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
J9LE10_ACYPI7.150e-1232.89Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
A0A6H5J5Z5_9PHAE9.310e-940.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A654HQ13_9CEST3.620e-644.62Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91864contigH-elongata_contig91864:1451..2185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.3780973-CDS-H-elongata_contig91864:1450..16611622931316.3780973-CDS-H-elongata_contig91864:1450..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91864 1451..1661 +
1691679786.6867054-CDS-H-elongata_contig91864:1450..16611691679786.6867054-CDS-H-elongata_contig91864:1450..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91864 1451..1661 +
1622931316.3978238-CDS-H-elongata_contig91864:1970..21851622931316.3978238-CDS-H-elongata_contig91864:1970..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91864 1971..2185 +
1691679786.7053797-CDS-H-elongata_contig91864:1970..21851691679786.7053797-CDS-H-elongata_contig91864:1970..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91864 1971..2185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91864.16641.1prot_H-elongata_contig91864.16641.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91864 1451..2185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91864.16641.1

>prot_H-elongata_contig91864.16641.1 ID=prot_H-elongata_contig91864.16641.1|Name=mRNA_H-elongata_contig91864.16641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
RSKELVFATWNVRTMSERGTNGPGHAEDLLMFAAKYECDFIAIQETRRDG
KTTIQAPATGYVVHCSGHCDGGLGDVQVLGPYGRDTLNDNGSRLLACATE
QKLPIVNTLFSTPKRGGNSDAFTHEGPKELHRWRLDYILVRQ
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mRNA from alignment at H-elongata_contig91864:1451..2185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91864.16641.1 ID=mRNA_H-elongata_contig91864.16641.1|Name=mRNA_H-elongata_contig91864.16641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at H-elongata_contig91864:1451..2185+ (Himanthalia elongata Himel1 dioecious)
CGTTCAAAGGAGCTGGTGTTTGCCACATGGAACGTCCGCACCATGTCCGA
GAGAGGGACCAACGGCCCGGGGCACGCCGAGGATCTTTTGATGTTCGCTG
CGAAGTACGAGTGCGACTTCATCGCCATACAGGAAACTCGCCGCGATGGA
AAGACAACCATCCAAGCACCAGCCACTGGTTATGTCGTGCACTGCAGCGG
TCATTGTGATGGTGATGGAGATAAGCCCGGGATACTCGGAGTTGGTCTGG
CTGTCAGGGAGCCTATCGCTCGCGCACTCGGCCCAGATGACATTGTGCCG
AAACACATCAGTGCGCGGCTGTTGAAGGTGAGGGTGATTTTCAAACACAG
AGCCGTGAAAACCTTCATCGTAGGACACGCTCCGACTGAAATAGCAGCCA
CCTGTCACAAGTCTAAGTTCTGGAAGAAACTTTTCAGCACTATCGCTGAG
GTACCTGCCAGCGACCACCTGATTTTGATGATGGATGCTAACGCCCGTAC
GGGAGGGAGGGGGGAGGGAGGTGGACTAGGGGATGTCCAGGTTTTGGGAC
CATACGGCAGAGACACTCTCAATGACAACGGGTCGCGACTTCTAGCATGT
GCTACCGAGCAGAAGCTGCCGATTGTCAACACCTTGTTCAGTACGCCGAA
GCGTGGGGGGAACTCGGATGCGTTCACACACGAGGGGCCGAAGGAATTAC
ACCGCTGGCGCCTGGACTACATCCTGGTACGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig91864:1451..2185+

>mRNA_H-elongata_contig91864.16641.1 ID=mRNA_H-elongata_contig91864.16641.1|Name=mRNA_H-elongata_contig91864.16641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig91864:1451..2185+ (Himanthalia elongata Himel1 dioecious)
CGTTCAAAGGAGCTGGTGTTTGCCACATGGAACGTCCGCACCATGTCCGA
GAGAGGGACCAACGGCCCGGGGCACGCCGAGGATCTTTTGATGTTCGCTG
CGAAGTACGAGTGCGACTTCATCGCCATACAGGAAACTCGCCGCGATGGA
AAGACAACCATCCAAGCACCAGCCACTGGTTATGTCGTGCACTGCAGCGG
TCATTGTGATGCGTTCAAAGGAGCTGGTGTTTGCCACATGGAACGTCCGC
ACCATGTCCGAGAGAGGGACCAACGGCCCGGGGCACGCCGAGGATCTTTT
GATGTTCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAAACTC
GCCGCGATGGAAAGACAACCATCCAAGCACCAGCCACTGGTTATGTCGTG
CACTGCAGCGGTCATTGTGATGGTGGACTAGGGGATGTCCAGGTTTTGGG
ACCATACGGCAGAGACACTCTCAATGACAACGGGTCGCGACTTCTAGCAT
GTGCTACCGAGCAGAAGCTGCCGATTGTCAACACCTTGTTCAGTACGCCG
AAGCGTGGGGGGAACTCGGATGCGTTCACACACGAGGGGCCGAAGGAATT
ACACCGCTGGCGCCTGGACTACATCCTGGTACGCCAGGTGGACTAGGGGA
TGTCCAGGTTTTGGGACCATACGGCAGAGACACTCTCAATGACAACGGGT
CGCGACTTCTAGCATGTGCTACCGAGCAGAAGCTGCCGATTGTCAACACC
TTGTTCAGTACGCCGAAGCGTGGGGGGAACTCGGATGCGTTCACACACGA
GGGGCCGAAGGAATTACACCGCTGGCGCCTGGACTACATCCTGGTACGCC
AG
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