mRNA_H-elongata_contig121666.1655.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121666.1655.1
Unique NamemRNA_H-elongata_contig121666.1655.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig121666.1655.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PLDEQTYNIVIELCKECGETSKALGILRSMSAAG 102
            PLDEQT+NI IELCKECG+TS A+GILR+M  AG
Sbjct:  725 PLDEQTHNIAIELCKECGDTSTAVGILRTMEGAG 758
[Close]
BLAST of mRNA_H-elongata_contig121666.1655.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PLDEQTYNIVIELCKECGETSKALGILRSMSAAG 102
            PLDEQT+NI IELCKECG+TS A+GILR+M  AG
Sbjct:  774 PLDEQTHNIAIELCKECGDTSTAVGILRAMEGAG 807
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121666.1655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZI4_9PHAE6.090e-976.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B5_ECTSI6.090e-976.47PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121666contigH-elongata_contig121666:171..305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.068978-CDS-H-elongata_contig121666:170..3051622929716.068978-CDS-H-elongata_contig121666:170..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121666 171..305 -
1691679130.0672214-CDS-H-elongata_contig121666:170..3051691679130.0672214-CDS-H-elongata_contig121666:170..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121666 171..305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121666.1655.1prot_H-elongata_contig121666.1655.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121666 171..305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121666.1655.1

>prot_H-elongata_contig121666.1655.1 ID=prot_H-elongata_contig121666.1655.1|Name=mRNA_H-elongata_contig121666.1655.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
PLDEQTYNIVIELCKECGETSKALGILRSMSAAGVSHGRVVVGSF
back to top

mRNA from alignment at H-elongata_contig121666:171..305-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121666.1655.1 ID=mRNA_H-elongata_contig121666.1655.1|Name=mRNA_H-elongata_contig121666.1655.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig121666:171..305- (Himanthalia elongata Himel1 dioecious)
CCGCTAGATGAACAAACCTACAACATAGTCATAGAGCTATGCAAGGAGTG
CGGCGAGACTTCGAAGGCGTTGGGCATCCTCCGGAGCATGTCGGCGGCAG
GCGTGAGTCACGGTCGGGTCGTTGTGGGCTCCTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig121666:171..305-

>mRNA_H-elongata_contig121666.1655.1 ID=mRNA_H-elongata_contig121666.1655.1|Name=mRNA_H-elongata_contig121666.1655.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig121666:171..305- (Himanthalia elongata Himel1 dioecious)
CCGCTAGATGAACAAACCTACAACATAGTCATAGAGCTATGCAAGGAGTG
CGGCGAGACTTCGAAGGCGTTGGGCATCCTCCGGAGCATGTCGGCGGCAG
GCGTGAGTCACGGTCGGGTCGTTGTGGGCTCCTTCCCGCTAGATGAACAA
ACCTACAACATAGTCATAGAGCTATGCAAGGAGTGCGGCGAGACTTCGAA
GGCGTTGGGCATCCTCCGGAGCATGTCGGCGGCAGGCGTGAGTCACGGTC
GGGTCGTTGTGGGCTCCTTC
back to top