prot_H-elongata_contig121661.1654.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig121661.1654.1
Unique Nameprot_H-elongata_contig121661.1654.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length161
Homology
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BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: D8LGB5_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB5_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 5.030e-74
Identity = 119/150 (79.33%), Postives = 132/150 (88.00%), Query Frame = 0 
Query:   11 RRRERVRSGSVSS---SVGFG-GPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTPSQVCVV 156
            +RR+RVRSGS+ S     GFG G +PQRE+ELSVA  NLTLEEI+GNVFRMSKDQIGCRLLQLKLDQGDP FV KIC EA+PYL+EMMKDPFGNYLFQKIADKVDE GR +LV +VA +MV+AGMNLHGTRSVQK+IEVCRGTPSQV VV
Sbjct:   24 KRRDRVRSGSIVSMAGGAGFGSGGEPQRETELSVAMENLTLEEIEGNVFRMSKDQIGCRLLQLKLDQGDPMFVSKICGEAQPYLSEMMKDPFGNYLFQKIADKVDEDGRTDLVNQVAGQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVV 173
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BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A6H5K3P5_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P5_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.040e-64
Identity = 114/145 (78.62%), Postives = 124/145 (85.52%), Query Frame = 0 
Query:   16 VRSGSVSS---SVGFG-GPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTPSQVCVV 156
            VRSGS+ S     GFG G DPQRE+ELSVA  NLTLEEIDGNVFRMSKDQ+   LLQLKLDQGDP FV KIC EA+PYL+EMMKDPFGNYLFQKIADKVDE GR +LV +VA +MV+AGMNLHGTRSVQK+IEVCRGTPSQV VV
Sbjct:  131 VRSGSIVSMGGGAGFGSGGDPQRETELSVAMENLTLEEIDGNVFRMSKDQVSV-LLQLKLDQGDPVFVSKICGEAQPYLSEMMKDPFGNYLFQKIADKVDEDGRTDLVNQVAGQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVV 274
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BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A1V9YPP5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPP5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.240e-27
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 0 
Query:   41 ATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLD-QGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVC 146
            A   L +E++ G V+ MSKDQ GCRLLQ +LD  G P   D I  EA P+L +MM DPFGNYLFQK+ ++V +  R E+VK+V+  +V A +NLHGTRSVQKV+EVC
Sbjct:  249 ANVTLAVEDLQGRVYAMSKDQNGCRLLQEQLDCVGRPDLCDVIYTEALPHLVDMMVDPFGNYLFQKLLERVADDQRLEIVKRVSPHLVAAALNLHGTRSVQKVVEVC 355
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BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A6A3WBV6_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WBV6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.860e-27
Identity = 75/163 (46.01%), Postives = 99/163 (60.74%), Query Frame = 0 
Query:    3 GFHDKVAAR---RRERVRSGSVSSSVGFGG-----------PDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 150
            GF  +  +R   R E   SGS+S  +  GG            DP   S LS A   L++E+I   VF MSKDQ GCRLLQ +LD  D A   + I  E+  +LAEMM DPFGNYLFQK+ ++V+E  R  ++++V+  +V A +NLHGTRSVQKV+EVC  +P
Sbjct:  540 GFGGRQQSRMGYRSENSSSGSMSLGLMNGGGMSAPMMGGAATDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 696
[Close]
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: V9FR80_PHYPR (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=V9FR80_PHYPR)

HSP 1 Score: 115 bits (287), Expect = 1.070e-26
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0 
Query:   16 VRSGSVSSSV-GFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 150
            +  GS+S+ + G    DP   S LS A   L++E+I   VF MSKDQ GCRLLQ +LD  D A   + I  E+  +LAEMM DPFGNYLFQK+ ++V+E  R  ++++V+  +V A +NLHGTRSVQKV+EVC  +P
Sbjct:  524 MNGGSMSAPMMGGSANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 654
[Close]
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A0W8D4Y9_PHYNI (Uncharacterized protein n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D4Y9_PHYNI)

HSP 1 Score: 115 bits (287), Expect = 1.070e-26
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0 
Query:   16 VRSGSVSSSV-GFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 150
            +  GS+S+ + G    DP   S LS A   L++E+I   VF MSKDQ GCRLLQ +LD  D A   + I  E+  +LAEMM DPFGNYLFQK+ ++V+E  R  ++++V+  +V A +NLHGTRSVQKV+EVC  +P
Sbjct:  480 MNGGSMSAPMMGGSANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 610
[Close]
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A7S2PAP6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PAP6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.890e-26
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 0 
Query:    6 DKVAARRRERVRSGSVSSSVGFGGPDPQRE---------SELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEV 145
            D+   + R R   G++S    +   DP  +         + L  +T    L E+ G+V R+S+DQ+GCRLLQ  LD+  P     I  E  P+LAE M DPFGNYLFQKI +KV++  R  L+  V+  +V+A +NLHGTRSVQKV+EV
Sbjct:  313 DRRNPKGRSRDMVGNISEHDSYAVDDPGYDLSNPPSEAITALYQSTRRPALSELLGHVRRLSRDQVGCRLLQQSLDEDGPDAATAILQEGLPFLAEAMTDPFGNYLFQKILEKVNDEERLRLISTVSPRLVNAALNLHGTRSVQKVVEV 461
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BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A662WKH4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKH4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.900e-26
Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 0 
Query:   16 VRSGSVSSSVGFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 150
            + SG    S    G      S LS A   L++E+I   VF MSKDQ GCRLLQ +LD  D A   + I  E+  +LAEMM DPFGNYLFQK+ ++V+E  R  ++++V+  +V A +NLHGTRSVQKV+EVC  +P
Sbjct:  277 MNSGGGGMSAPMMGGATADASSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 409
[Close]
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: G4ZK69_PHYSP (PUM-HD domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZK69_PHYSP)

HSP 1 Score: 114 bits (285), Expect = 1.960e-26
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 0 
Query:   25 VGFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 150
            +G    DP   S LS A   L++E+I   VF MSKDQ GCRLLQ +LD  D A   + I  E+  +LAEMM DPFGNYLFQK+ ++V+E  R  ++++V+  +V A +NLHGTRSVQKV+EVC  +P
Sbjct:  433 MGGAANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 553
[Close]
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: H3GN50_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GN50_PHYRM)

HSP 1 Score: 114 bits (285), Expect = 1.980e-26
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 0 
Query:   16 VRSGSVSSSV-GFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVC 146
            +  GS+SS + G    DP   S LS A   L++E+I   VF MSKDQ GCRLLQ +LD  D A   + I  E+  +LAEMM DPFGNYLFQK+ ++V+E  R  ++++V+  +V A +NLHGTRSVQKV+EVC
Sbjct:  495 MNGGSMSSPMMGGSANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVC 621
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB5_ECTSI5.030e-7479.33PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K3P5_9PHAE2.040e-6478.62PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1V9YPP5_9STRA1.240e-2756.07Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6A3WBV6_9STRA7.860e-2746.01Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
V9FR80_PHYPR1.070e-2649.64Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A0W8D4Y9_PHYNI1.070e-2649.64Uncharacterized protein n=2 Tax=Phytophthora nicot... [more]
A0A7S2PAP6_9STRA1.890e-2642.95Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A662WKH4_9STRA1.900e-2648.53Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
G4ZK69_PHYSP1.960e-2651.18PUM-HD domain-containing protein n=1 Tax=Phytophth... [more]
H3GN50_PHYRM1.980e-2651.13Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 85..120
e-value: 0.0042
score: 26.3
coord: 49..84
e-value: 0.0028
score: 26.9
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 49..84
score: 6.984
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 85..120
score: 8.617
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 121..156
score: 5.911
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 42..160
e-value: 2.0E-30
score: 107.6
NoneNo IPR availablePANTHERPTHR12537:SF13PUMILIO HOMOLOGY DOMAIN FAMILY MEMBER 4coord: 35..152
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 35..152
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 28..161
score: 24.473
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 42..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121661contigH-elongata_contig121661:310..1659 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121661.1654.1mRNA_H-elongata_contig121661.1654.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig121661 310..1659 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig121661.1654.1 ID=prot_H-elongata_contig121661.1654.1|Name=mRNA_H-elongata_contig121661.1654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MFGFHDKVAARRRERVRSGSVSSSVGFGGPDPQRESELSVATNNLTLEEI
DGNVFRMSKDQIGCRLLQLKLDQGDPAFVDKICVEAKPYLAEMMKDPFGN
YLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP
SQVCVVLVLAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold