prot_H-elongata_contig90240.16512.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig90240.16512.1
Unique Nameprot_H-elongata_contig90240.16512.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
[Close]
BLAST of mRNA_H-elongata_contig90240.16512.1 vs. uniprot
Match: A0A4D9DBJ1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBJ1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.340e-7
Identity = 44/152 (28.95%), Postives = 64/152 (42.11%), Query Frame = 0 
Query:    2 EKHGVAPDVVSYNSVISGHERAGEWREALALARQMERS-------------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLFEELTM------------SSDTSLTPDLYSYNTVMTFFSDSGMLPRALDLLEEAKARGLRPDVVTYRR 128
            E+HG+APD VS+ ++I    RAGEWR ALAL   ME +             E                             L L +E+ +            + D  ++  ++S  T++T    SG LPR L LLE  + +G+ PD+ TY R
Sbjct:  673 ERHGLAPDSVSFTTLIQACGRAGEWRRALALLHAMEGARGGEGRGQGEDGAEAGAWGEGMSEQAVLAAVEACAENGEVEEGLQLCQEILVRRLGPDRAREERTQDALVSAVIFS--TMITLACRSGALPRVLGLLETLREQGIAPDLATYTR 822
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90240.16512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4D9DBJ1_9STRA6.340e-728.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..57
e-value: 1.3E-12
score: 47.6
coord: 86..126
e-value: 1.8E-8
score: 34.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..46
e-value: 1.0E-7
score: 29.7
coord: 89..123
e-value: 1.5E-5
score: 22.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..80
score: 6.993
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..44
score: 10.413
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 87..121
score: 10.961
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..67
e-value: 5.4E-18
score: 66.9
coord: 68..128
e-value: 1.0E-11
score: 46.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90240contigH-elongata_contig90240:1268..2420 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90240.16512.1mRNA_H-elongata_contig90240.16512.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig90240 1268..2420 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig90240.16512.1 ID=prot_H-elongata_contig90240.16512.1|Name=mRNA_H-elongata_contig90240.16512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
QEKHGVAPDVVSYNSVISGHERAGEWREALALARQMERSEGISPTVVTFN
SAIGACKRAGQPMEALAIALSLFEELTMSSDTSLTPDLYSYNTVMTFFSD
SGMLPRALDLLEEAKARGLRPDVVTYRRDKFC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf