prot_H-elongata_contig90202.16508.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig90202.16508.1
Unique Nameprot_H-elongata_contig90202.16508.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: A0A843UHH6_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UHH6_COLES)

HSP 1 Score: 52.0 bits (123), Expect = 2.160e-6
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 0
Query:    5 EWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            +WW  +G+    KDLA VA+RVLS+  ++ G ERNWS FG  H   +
Sbjct:   32 DWWLDHGRTYGYKDLAYVAIRVLSQTTSATGCERNWSTFGLIHTKQR 78          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI00064DD72F (uncharacterized protein LOC105954144 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DD72F)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0
Query:    3 PYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            P  WW  YG  G++K+L ++AMR+LS   ++ G ERNWS F   H   +
Sbjct:  504 PALWWESYG--GEVKELQKIAMRILSLTCSATGCERNWSTFEQVHTKRR 550          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI001F5D9B65 (uncharacterized protein LOC124671119 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D9B65)

HSP 1 Score: 48.1 bits (113), Expect = 2.490e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            M P EWW  +G  G++ +L + A+R++S+  +S+G ERNWS F   H   +
Sbjct:    1 MAPTEWWFQFG--GEVPNLQKCALRIVSQCVSSSGRERNWSAFAMVHTKQR 49          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI001F5D9FB2 (uncharacterized protein LOC124693233 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D9FB2)

HSP 1 Score: 48.5 bits (114), Expect = 3.880e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            M P EWW  +G  G++ +L + A+R++S+  +S+G ERNWS F   H   +
Sbjct:  115 MAPTEWWFQFG--GEVPNLQKCALRIVSQCVSSSGCERNWSAFAMVHTKQR 163          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI001D0106EC (uncharacterized protein LOC123176651 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0106EC)

HSP 1 Score: 48.1 bits (113), Expect = 4.730e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            M P EWW  +G  G++ +L + A+R++S+  +S+G ERNWS F   H   +
Sbjct:   53 MSPTEWWFQFG--GEVPNLQKCALRIVSQCVSSSGCERNWSAFALVHTKQR 101          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI001D034A95 (uncharacterized protein LOC123072353 n=3 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D034A95)

HSP 1 Score: 48.1 bits (113), Expect = 5.340e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            M P EWW  +G  G++ +L + A+R++S+  +S+G ERNWS F   H   +
Sbjct:  242 MSPTEWWFQFG--GEVPNLQKCALRIVSQCVSSSGCERNWSAFALVHTKQR 290          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI0018911F24 (uncharacterized protein LOC119334134 n=1 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI0018911F24)

HSP 1 Score: 48.1 bits (113), Expect = 5.380e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            M P EWW  +G  G++ +L + A+R++S+  +S+G ERNWS F   H   +
Sbjct:  690 MSPTEWWFQFG--GEVPNLQKCALRIVSQCVSSSGCERNWSAFALVHTKQR 738          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI001D1A5494 (uncharacterized protein LOC123426373 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI001D1A5494)

HSP 1 Score: 47.8 bits (112), Expect = 7.230e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            M P EWW  +G  GD+ +L + A+R++S+  +S+G ERNWS +   H   +
Sbjct:   90 MSPTEWWFQFG--GDVPNLQKYALRIVSQCVSSSGCERNWSAWALVHTKQR 138          
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Match: UPI00162D0581 (uncharacterized protein LOC123396332 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI00162D0581)

HSP 1 Score: 47.8 bits (112), Expect = 7.300e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISMQ 51
            M P EWW  +G  GD+ +L + A+R++S+  +S+G ERNWS +   H   +
Sbjct:  214 MSPTEWWFQFG--GDVPNLQKYALRIVSQCVSSSGCERNWSAWALVHTKQR 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90202.16508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A843UHH6_COLES2.160e-646.81Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
UPI00064DD72F1.530e-542.86uncharacterized protein LOC105954144 n=1 Tax=Eryth... [more]
UPI001F5D9B652.490e-539.22uncharacterized protein LOC124671119 n=1 Tax=Loliu... [more]
UPI001F5D9FB23.880e-539.22uncharacterized protein LOC124693233 n=1 Tax=Loliu... [more]
UPI001D0106EC4.730e-539.22uncharacterized protein LOC123176651 n=1 Tax=Triti... [more]
UPI001D034A955.340e-539.22uncharacterized protein LOC123072353 n=3 Tax=Triti... [more]
UPI0018911F245.380e-539.22uncharacterized protein LOC119334134 n=1 Tax=Triti... [more]
UPI001D1A54947.230e-539.22uncharacterized protein LOC123426373 n=1 Tax=Horde... [more]
UPI00162D05817.300e-539.22uncharacterized protein LOC123396332 n=1 Tax=Horde... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90202contigH-elongata_contig90202:2288..2443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90202.16508.1mRNA_H-elongata_contig90202.16508.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig90202 2288..2443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig90202.16508.1 ID=prot_H-elongata_contig90202.16508.1|Name=mRNA_H-elongata_contig90202.16508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MPPYEWWRVYGKMGDMKDLARVAMRVLSKVPASAGAERNWSLFGGTHISM
Q*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf