mRNA_H-elongata_contig89521.16452.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89521.16452.1
Unique NamemRNA_H-elongata_contig89521.16452.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89521.16452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89521contigH-elongata_contig89521:379..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931295.3973145-CDS-H-elongata_contig89521:378..7141622931295.3973145-CDS-H-elongata_contig89521:378..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89521 379..714 +
1691679777.7588375-CDS-H-elongata_contig89521:378..7141691679777.7588375-CDS-H-elongata_contig89521:378..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89521 379..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89521.16452.1prot_H-elongata_contig89521.16452.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89521 379..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89521.16452.1

>prot_H-elongata_contig89521.16452.1 ID=prot_H-elongata_contig89521.16452.1|Name=mRNA_H-elongata_contig89521.16452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
SLERCRKIGNSFSRCCISIFAIVSISSIISWLASRCTKGMLLKDFKEIDA
FWYPLSKRDSVIVLQCPYLQRGDDRRDAILLGVVATYWASAQKQRKSATL
DGNYRLTRVAD*
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mRNA from alignment at H-elongata_contig89521:379..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89521.16452.1 ID=mRNA_H-elongata_contig89521.16452.1|Name=mRNA_H-elongata_contig89521.16452.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig89521:379..714+ (Himanthalia elongata Himel1 dioecious)
TCTCTCGAAAGGTGTCGGAAGATTGGAAATTCGTTTTCTCGGTGTTGTAT
CTCGATCTTCGCGATTGTCTCGATATCCTCGATCATCTCGTGGCTTGCTA
GCCGTTGCACCAAAGGGATGCTTCTGAAAGACTTTAAAGAGATTGACGCC
TTTTGGTACCCTCTCTCGAAAAGGGACTCTGTGATCGTGTTACAATGCCC
CTACCTGCAGCGAGGCGATGATCGACGTGACGCGATCTTGTTAGGGGTAG
TCGCGACCTATTGGGCGTCGGCGCAAAAGCAGCGAAAGAGTGCGACACTC
GACGGGAACTACAGGCTTACGCGAGTTGCTGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig89521:379..714+

>mRNA_H-elongata_contig89521.16452.1 ID=mRNA_H-elongata_contig89521.16452.1|Name=mRNA_H-elongata_contig89521.16452.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig89521:379..714+ (Himanthalia elongata Himel1 dioecious)
TCTCTCGAAAGGTGTCGGAAGATTGGAAATTCGTTTTCTCGGTGTTGTAT
CTCGATCTTCGCGATTGTCTCGATATCCTCGATCATCTCGTGGCTTGCTA
GCCGTTGCACCAAAGGGATGCTTCTGAAAGACTTTAAAGAGATTGACGCC
TTTTGGTACCCTCTCTCGAAAAGGGACTCTGTGATCGTGTTACAATGCCC
CTACCTGCAGCGAGGCGATGATCGACGTGACGCGATCTTGTTAGGGGTAG
TCGCGACCTATTGGGCGTCGGCGCAAAAGCAGCGAAAGAGTGCGACACTC
GACGGGAACTACAGGCTTACGCGAGTTGCTGATTGATCTCTCGAAAGGTG
TCGGAAGATTGGAAATTCGTTTTCTCGGTGTTGTATCTCGATCTTCGCGA
TTGTCTCGATATCCTCGATCATCTCGTGGCTTGCTAGCCGTTGCACCAAA
GGGATGCTTCTGAAAGACTTTAAAGAGATTGACGCCTTTTGGTACCCTCT
CTCGAAAAGGGACTCTGTGATCGTGTTACAATGCCCCTACCTGCAGCGAG
GCGATGATCGACGTGACGCGATCTTGTTAGGGGTAGTCGCGACCTATTGG
GCGTCGGCGCAAAAGCAGCGAAAGAGTGCGACACTCGACGGGAACTACAG
GCTTACGCGAGTTGCTGATTGA
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