mRNA_H-elongata_contig89321.16432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89321.16432.1
Unique NamemRNA_H-elongata_contig89321.16432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89321.16432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89321contigH-elongata_contig89321:1875..2361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size487
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89321.16432.1prot_H-elongata_contig89321.16432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89321 1992..2300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931293.7278914-UTR-H-elongata_contig89321:1874..19911622931293.7278914-UTR-H-elongata_contig89321:1874..1991Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89321 1875..1991 +
1691679777.0333955-UTR-H-elongata_contig89321:1874..19911691679777.0333955-UTR-H-elongata_contig89321:1874..1991Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89321 1875..1991 +
1622931293.768683-UTR-H-elongata_contig89321:2300..23611622931293.768683-UTR-H-elongata_contig89321:2300..2361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89321 2301..2361 +
1691679777.050002-UTR-H-elongata_contig89321:2300..23611691679777.050002-UTR-H-elongata_contig89321:2300..2361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89321 2301..2361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931293.7480164-CDS-H-elongata_contig89321:1991..23001622931293.7480164-CDS-H-elongata_contig89321:1991..2300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89321 1992..2300 +
1691679777.041683-CDS-H-elongata_contig89321:1991..23001691679777.041683-CDS-H-elongata_contig89321:1991..2300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89321 1992..2300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89321.16432.1

>prot_H-elongata_contig89321.16432.1 ID=prot_H-elongata_contig89321.16432.1|Name=mRNA_H-elongata_contig89321.16432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MGVNLRGHIFCWKCACIQLHLLSHEEHGLFSAGTSLPRYQLQRFSSRRNM
HGGIKTRKRLDRLLVSPSNTYMVGKKASRSPFGAANREWNPMHRTHHGRL
SS*
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mRNA from alignment at H-elongata_contig89321:1875..2361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89321.16432.1 ID=mRNA_H-elongata_contig89321.16432.1|Name=mRNA_H-elongata_contig89321.16432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=487bp|location=Sequence derived from alignment at H-elongata_contig89321:1875..2361+ (Himanthalia elongata Himel1 dioecious)
GTGTATTCGTGTATGTGTGCAATGTGTGTGTATTTATTAAATTGCACATA
GCCGCGCAATCTGGCCGTGTCAGGCTAGCCATTCTATGCTATCAATACTG
CATGTAACCCACCTGGAATGGGGGTTAATTTACGTGGACATATTTTTTGC
TGGAAATGCGCGTGCATCCAGCTACATCTCCTCTCCCACGAAGAACATGG
TTTGTTCTCGGCCGGAACGTCACTCCCTCGATATCAACTACAACGATTTT
CTTCCCGGAGAAACATGCATGGTGGGATAAAAACACGAAAAAGGTTGGAC
AGGCTGCTTGTGTCTCCCTCCAACACATACATGGTGGGTAAAAAAGCTAG
TCGCTCGCCGTTTGGCGCAGCAAATAGAGAGTGGAATCCGATGCACAGGA
CGCACCACGGCCGGCTCTCCTCGTAATATCCCCATCCAACATCAACACCC
GACAATCTCGTCACCACCATCCAACCGTGCAACGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig89321:1875..2361+

>mRNA_H-elongata_contig89321.16432.1 ID=mRNA_H-elongata_contig89321.16432.1|Name=mRNA_H-elongata_contig89321.16432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig89321:1875..2361+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGTTAATTTACGTGGACATATTTTTTGCTGGAAATGCGCGTGCAT
CCAGCTACATCTCCTCTCCCACGAAGAACATGGTTTGTTCTCGGCCGGAA
CGTCACTCCCTCGATATCAACTACAACGATTTTCTTCCCGGAGAAACATG
CATGGTGGGATAAAAACACGAAAAAGGTTGGACAGGCTGCTTGTGTCTCC
CTCCAACACATACATGGTGGGTAAAAAAGCTAGTCGCTCGCCGTTTGGCG
CAGCAAATAGAGAGTGGAATCCGATGCACAGGACGCACCACGGCCGGCTC
TCCTCGTAAATGGGGGTTAATTTACGTGGACATATTTTTTGCTGGAAATG
CGCGTGCATCCAGCTACATCTCCTCTCCCACGAAGAACATGGTTTGTTCT
CGGCCGGAACGTCACTCCCTCGATATCAACTACAACGATTTTCTTCCCGG
AGAAACATGCATGGTGGGATAAAAACACGAAAAAGGTTGGACAGGCTGCT
TGTGTCTCCCTCCAACACATACATGGTGGGTAAAAAAGCTAGTCGCTCGC
CGTTTGGCGCAGCAAATAGAGAGTGGAATCCGATGCACAGGACGCACCAC
GGCCGGCTCTCCTCGTAA
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