mRNA_H-elongata_contig8919.16421.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8919.16421.1
Unique NamemRNA_H-elongata_contig8919.16421.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8919.16421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8919contigH-elongata_contig8919:4602..6556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size431
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8919.16421.1prot_H-elongata_contig8919.16421.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8919 4602..6555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.4291255-CDS-H-elongata_contig8919:4601..46651622931292.4291255-CDS-H-elongata_contig8919:4601..4665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 4602..4665 +
1691679776.5268252-CDS-H-elongata_contig8919:4601..46651691679776.5268252-CDS-H-elongata_contig8919:4601..4665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 4602..4665 +
1622931292.4473515-CDS-H-elongata_contig8919:5055..51631622931292.4473515-CDS-H-elongata_contig8919:5055..5163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 5056..5163 +
1691679776.5363925-CDS-H-elongata_contig8919:5055..51631691679776.5363925-CDS-H-elongata_contig8919:5055..5163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 5056..5163 +
1622931292.4674516-CDS-H-elongata_contig8919:5537..56571622931292.4674516-CDS-H-elongata_contig8919:5537..5657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 5538..5657 +
1691679776.546387-CDS-H-elongata_contig8919:5537..56571691679776.546387-CDS-H-elongata_contig8919:5537..5657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 5538..5657 +
1622931292.4851854-CDS-H-elongata_contig8919:6027..61381622931292.4851854-CDS-H-elongata_contig8919:6027..6138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 6028..6138 +
1691679776.5567904-CDS-H-elongata_contig8919:6027..61381691679776.5567904-CDS-H-elongata_contig8919:6027..6138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 6028..6138 +
1622931292.502593-CDS-H-elongata_contig8919:6529..65551622931292.502593-CDS-H-elongata_contig8919:6529..6555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 6530..6555 +
1691679776.572856-CDS-H-elongata_contig8919:6529..65551691679776.572856-CDS-H-elongata_contig8919:6529..6555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8919 6530..6555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8919.16421.1

>prot_H-elongata_contig8919.16421.1 ID=prot_H-elongata_contig8919.16421.1|Name=mRNA_H-elongata_contig8919.16421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
KNNDYDDVLCNGDCDEDECCDVKIFCGTYTCSDGYEHKDGYKDILCDGDC
DEDGCCDAGPTAKVYCDTYICLDGHEPKCGYKDILCDGYCDEHECCDVEV
YCETHTCSYGYENKDGFNYILCDGDCDDDKCCDEELYCDTYTC
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mRNA from alignment at H-elongata_contig8919:4602..6556+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8919.16421.1 ID=mRNA_H-elongata_contig8919.16421.1|Name=mRNA_H-elongata_contig8919.16421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1955bp|location=Sequence derived from alignment at H-elongata_contig8919:4602..6556+ (Himanthalia elongata Himel1 dioecious)
AAAAATAATGATTACGATGACGTCCTCTGTAACGGTGATTGCGACGAGGA
CGAATGCTGCGACGGTAAGCGTATTCTTTGTCTACATCATGGAGTACGAT
TTGGTAGTAAGATCGCGTTTTATTCCTTCCAGTCAACTGTTATGGGCCGT
ACACGAAGGGCACAATTCGTAGCCCTCCGCCTCATTTATTTCCGTTTTTG
TCACGGGACACAATTTGTCCATTTGTCCCGAATTATAGCTTTTCAATTCA
GCTGCCATCCTTGGAGTTGCCAGTTGTAGGCCATAGCGAAAGGTCATTAT
TGGTAAGCTTTTGCATGTCATCATCTCGAACCAAGGACATATGGTCCAGG
CAAGTAATTAAACGGCTACTGCGGTGCATTACACCGAGTTCTGTACGATT
GGCAAATGCGCCACAAGCTCTCCTCCATTTATGCGGAATCGCACGCTCAC
ACAGTGAAAATCTTCTGCGGAACATACACCTGTTCTGATGGCTACGAGCA
CAAGGACGGCTACAAAGACATTCTCTGCGACGGTGATTGTGACGAGGATG
GATGCTGCGACGGTAAGTGTAGTCTTTATTTACATTATGGAATACAATTC
GATAGTAAGAACCTGTTTATTCTTAGTCGACCGCTATGGACTGTAGACGA
AGGGTACTGTTCGTAACCATCCGCGTTATTTCCGTTTTTTTTTGTCACGG
GACACGATTTGGCCATTTGCCCCGAATTGTAATTTTTTGGCTCAGCTTAT
ATCGTTGGAGTTACCAATTGTGGGCCATAGCGGAAGGCTATTATTGGTAG
GTGTTTGCATGTCATCATGCCTAACCAAGGAAATGTCGTCCCGGCAATTA
TATGAACAACTACTACCGTTTGTTTTAAATGATTCTTACACCATTAACCC
TCGTGCCTCAAACTCTCCTGCATTTATTCGGAATAGCCGGCCCCACAGCA
AAAGTCTACTGCGATACATACATCTGCCTCGACGGACATGAGCCAAAATG
TGGCTATAAGGACATTCTCTGCGACGGCTATTGTGATGAACACGAATGCT
GCGACGGTAAGTTTAGTATTTTTCTACATCATAAAGTACGATTCGATAGT
TACCTCCGACAAGCTGTTCATACTATTCCAATCGCCCGCTATTATTGGCC
GTAGACGAAGGGTACTGTTCGTAGCCCTCCCCCTCATTTCCGTTTTTCTC
ACGGGACATCATTCGATTATTTTCTCCCGCACTACTGTTATACGGTTCGG
CTGCCATCCTTGGAATGGGTCATAGCGGAAGATCATTGTTCGTAGCCTTT
CGCCTTTCTTTGGTTCTAAACAAGGAAATATCGTCACGGTAATGTAATGG
AAGGGCTTCTTTGCTATTCATTACACCGAGTGCCACAAACTTGCCTATAT
TTTTGTGGAATCACCCGCTTCAACAGTGGAAGTCTACTGCGAAACACACA
CCTGCTCCTACGGCTACGAGAACAAGGACGGCTTTAATTACATTCTCTGT
GACGGTGATTGTGACGATGACAAGTGCTGCGACGAAGGTGTGAACAACTG
TTCTCTCACGGGGGGTAATATTAAGTCATTTCTCCAGCACAACCTCCCAG
TATTATTCTCTGTGACGGTGATTGTGACGATGACGAGTGCTGCGACGAAG
TTGAGAACAACTTCTCTCACGGGGGGTAATATTAAGTCATTTCTCCAGCA
CAACCTCCCAGTAATAGACTCTGGCTGCCTTCTTCCAAGTTGACCATTGT
GACCCAGATCCGAACGCATATATTCGTAGTCCCCCGTTTCTCTTCGATCC
AGCATCAGTAAATATTGCCACGACCATTACACATGTCTATTATCGAATAT
ACTGGCTGATGCACCATTGGCGGCCGTGGTTCATACTCTTCCATATGAAA
ATCGAATCGTCCGCCCCCGTAATGGCAGAATTATACTGTGATACATACAC
CTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig8919:4602..6556+

>mRNA_H-elongata_contig8919.16421.1 ID=mRNA_H-elongata_contig8919.16421.1|Name=mRNA_H-elongata_contig8919.16421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig8919:4602..6556+ (Himanthalia elongata Himel1 dioecious)
AAAAATAATGATTACGATGACGTCCTCTGTAACGGTGATTGCGACGAGGA
CGAATGCTGCGACGAAAAATAATGATTACGATGACGTCCTCTGTAACGGT
GATTGCGACGAGGACGAATGCTGCGACGTGAAAATCTTCTGCGGAACATA
CACCTGTTCTGATGGCTACGAGCACAAGGACGGCTACAAAGACATTCTCT
GCGACGGTGATTGTGACGAGGATGGATGCTGCGACGTGAAAATCTTCTGC
GGAACATACACCTGTTCTGATGGCTACGAGCACAAGGACGGCTACAAAGA
CATTCTCTGCGACGGTGATTGTGACGAGGATGGATGCTGCGACGCCGGCC
CCACAGCAAAAGTCTACTGCGATACATACATCTGCCTCGACGGACATGAG
CCAAAATGTGGCTATAAGGACATTCTCTGCGACGGCTATTGTGATGAACA
CGAATGCTGCGACGCCGGCCCCACAGCAAAAGTCTACTGCGATACATACA
TCTGCCTCGACGGACATGAGCCAAAATGTGGCTATAAGGACATTCTCTGC
GACGGCTATTGTGATGAACACGAATGCTGCGACGTGGAAGTCTACTGCGA
AACACACACCTGCTCCTACGGCTACGAGAACAAGGACGGCTTTAATTACA
TTCTCTGTGACGGTGATTGTGACGATGACAAGTGCTGCGACGAAGTGGAA
GTCTACTGCGAAACACACACCTGCTCCTACGGCTACGAGAACAAGGACGG
CTTTAATTACATTCTCTGTGACGGTGATTGTGACGATGACAAGTGCTGCG
ACGAAGAATTATACTGTGATACATACACCTGCAATTATACTGTGATACAT
ACACCTGC
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