mRNA_H-elongata_contig89159.16418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89159.16418.1
Unique NamemRNA_H-elongata_contig89159.16418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: D7FI31_ECTSI (Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI31_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 7.730e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTG 123
            GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTG
Sbjct:   66 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTG 106
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A6U0U5L7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0U5L7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.470e-11
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKV 117
            GLKGA++YYDGQMND R+SL +ALTA Q GA +ANRV+V
Sbjct:  219 GLKGAVVYYDGQMNDTRMSLTIALTAAQSGAAVANRVRV 257
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A7S3XZ35_HETAK (Glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ35_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 1.710e-11
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRV 111
            GLKGAI+YYDGQMND R++LVVALTA Q+GA +ANRV
Sbjct:  181 GLKGAIVYYDGQMNDTRMNLVVALTADQEGAAVANRV 217
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A7R9U304_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U304_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-11
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKV 117
            GLKGA++YYDGQMND R+SL +ALTA Q GA +ANRV+V
Sbjct:  219 GLKGAVVYYDGQMNDTRMSLTIALTAAQSGAAVANRVRV 257
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A4D9CPV7_9STRA (Glycerol-3-phosphate dehydrogenase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPV7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.920e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKV 117
            GLKGAIIYYDGQMND R+ L +ALTA Q+GA IANRV+V
Sbjct:  241 GLKGAIIYYDGQMNDTRMGLTIALTAAQEGAAIANRVEV 279
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A7R9U2T1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2T1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.920e-11
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKV 117
            GLKGA++YYDGQMND R+SL +ALTA Q GA +ANRV+V
Sbjct:  219 GLKGAVVYYDGQMNDTRMSLTIALTAAQSGAAVANRVRV 257
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A7S1U9Q1_9STRA (Glycerol-3-phosphate dehydrogenase n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.580e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKV 117
            GLKGAI+YYDGQMND R++L +ALTA Q GA IANRV+V
Sbjct:  215 GLKGAIVYYDGQMNDTRMALTIALTAAQSGAAIANRVEV 253
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A835ZCY6_9STRA (Glycerol-3-phosphate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.890e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVK 114
            GLKGA+IYYDGQMND R+SL +ALTATQ GA +A+RV+
Sbjct:  218 GLKGAVIYYDGQMNDTRMSLTIALTATQSGAAVASRVR 255
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: A0A812VKL9_9DINO (Glycerol-3-phosphate dehydrogenase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VKL9_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 9.140e-11
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTG 123
            GLKGAI+YYDGQMND+R++L++ALTA Q  A +AN VKV G
Sbjct:  194 GLKGAIVYYDGQMNDSRMNLMIALTAAQYNAAVANYVKVVG 234
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BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Match: UPI0008F9C595 (glycerol-3-phosphate dehydrogenase, mitochondrial n=2 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C595)

HSP 1 Score: 63.2 bits (152), Expect = 1.710e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 LKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTG 123
            LKGAI+YYDGQ +DAR+ L +ALTAT+ GA +AN VKVTG
Sbjct:  209 LKGAIVYYDGQQDDARMCLAIALTATRHGATVANHVKVTG 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89159.16418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI31_ECTSI7.730e-18100.00Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocar... [more]
A0A6U0U5L7_9STRA1.470e-1171.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3XZ35_HETAK1.710e-1178.38Glycerol-3-phosphate dehydrogenase (Fragment) n=1 ... [more]
A0A7R9U304_9STRA1.900e-1171.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9CPV7_9STRA1.920e-1176.92Glycerol-3-phosphate dehydrogenase n=3 Tax=Monodop... [more]
A0A7R9U2T1_9STRA1.920e-1171.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U9Q1_9STRA3.580e-1174.36Glycerol-3-phosphate dehydrogenase n=3 Tax=Phaeomo... [more]
A0A835ZCY6_9STRA4.890e-1173.68Glycerol-3-phosphate dehydrogenase n=1 Tax=Tribone... [more]
A0A812VKL9_9DINO9.140e-1168.29Glycerol-3-phosphate dehydrogenase n=1 Tax=Symbiod... [more]
UPI0008F9C5951.710e-1070.00glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89159contigH-elongata_contig89159:375..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog4792.ETI46979
KEGG rclassRC00029
KEGG koko:K00111
KEGG ReactionR00848
KEGG Pathwayko00564,ko01110,map00564,map01110
EggNOG free text desc.C-terminal domain of alpha-glycerophosphate oxidase
EggNOG OGs3Q7YZ@4776,COG0578@1,KOG0042@2759
EC1.1.5.3
COG Functional cat.C
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.2500908-CDS-H-elongata_contig89159:374..5001622931292.2500908-CDS-H-elongata_contig89159:374..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 375..500 -
1691679776.4605474-CDS-H-elongata_contig89159:374..5001691679776.4605474-CDS-H-elongata_contig89159:374..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 375..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89159.16418.1prot_H-elongata_contig89159.16418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89159 375..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89159.16418.1

>prot_H-elongata_contig89159.16418.1 ID=prot_H-elongata_contig89159.16418.1|Name=mRNA_H-elongata_contig89159.16418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTG*
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mRNA from alignment at H-elongata_contig89159:375..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89159.16418.1 ID=mRNA_H-elongata_contig89159.16418.1|Name=mRNA_H-elongata_contig89159.16418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig89159:375..500- (Himanthalia elongata Himel1 dioecious)
GGCTTGAAGGGGGCGATTATTTACTACGATGGACAGATGAACGACGCCCG
CTTGAGCCTGGTGGTCGCGCTCACCGCAACGCAGCAGGGTGCTTGCATAG
CCAACAGGGTCAAGGTTACGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig89159:375..500-

>mRNA_H-elongata_contig89159.16418.1 ID=mRNA_H-elongata_contig89159.16418.1|Name=mRNA_H-elongata_contig89159.16418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig89159:375..500- (Himanthalia elongata Himel1 dioecious)
GGCTTGAAGGGGGCGATTATTTACTACGATGGACAGATGAACGACGCCCG
CTTGAGCCTGGTGGTCGCGCTCACCGCAACGCAGCAGGGTGCTTGCATAG
CCAACAGGGTCAAGGTTACGGGGTGAGGCTTGAAGGGGGCGATTATTTAC
TACGATGGACAGATGAACGACGCCCGCTTGAGCCTGGTGGTCGCGCTCAC
CGCAACGCAGCAGGGTGCTTGCATAGCCAACAGGGTCAAGGTTACGGGGT
GA
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