mRNA_H-elongata_contig88997.16409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88997.16409.1
Unique NamemRNA_H-elongata_contig88997.16409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 115 bits (288), Expect = 5.590e-29
Identity = 56/145 (38.62%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYR--DSRKKVGLLKKAMYGLVHAGLLW 429
            W +A+  EM+       W++V++P+ K  +G R +F  K   DG IE+YK RLVA+G  +  GI Y+E+ +P     ++R+VL++ A  GW+  QLDV   ++  ++EEE+Y+E+P+ ++  + R KV LLKKA+YGL  +   W
Sbjct:    6 WTQAMKEEMNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 118 bits (295), Expect = 4.880e-28
Identity = 58/144 (40.28%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 429
            W+ A+A+E++   +   W+VV+ P  K  +G + ++  K + DG IE+YK RLVAQG  +I+GI Y+E  SP     S+R  L+++ A  WE  Q+DVN  ++  D+EEE+Y++LPE ++ + K KV  L+K++YGL  A   W
Sbjct:  565 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 117 bits (293), Expect = 6.700e-28
Identity = 58/144 (40.28%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 429
            W+ A+A+E++   +   W+VV+ P  K  +G + ++  K + DG IE+YK RLVAQG  +I+GI Y+E+ SP     S+R  L++  A  WE  Q+DVN  ++  D+EEE+Y++LPE ++ + K KV  L+K++YGL  A   W
Sbjct:   96 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 116 bits (291), Expect = 1.710e-27
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 429
            W+ A+A+E++   +   W+VV+ P  K  +G + ++  K + DG IE+YK RLVAQG  +I+GI Y+E  SP     S+R  L++  A  WE  Q+DVN  ++  D+EEE+Y++LPE ++ + K KV  L+K++YGL  A   W
Sbjct:  819 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 108 bits (271), Expect = 3.470e-27
Identity = 57/151 (37.75%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAY--------RDSRKKVGLLKKAMYGLVHAGLLW 429
            WK+A+  E +       W +V+RP+ KTV+G+R VF  K+  DG +E+ K RLVA+G  +I G HY E+ +     +SIR V+++ A    E  QLD    Y+  ++EEEIY+E+P+          +D   KV  ++KA+YGL  +G +W
Sbjct:   32 WKKAMLEEYNSLEKNKTWTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: W8BPA6_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BPA6_CERCA)

HSP 1 Score: 110 bits (274), Expect = 2.760e-25
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK--KVGLLKKAMYGLVHAGLLW 429
            W+ A+  E D  T  G W + +RP  K V+G R VF +K D+ GK+EKYK RLVAQGC +  G  +E + +P     +IR++LS+ A        +DV   Y+  ++EEE+Y+  PE + D  K  KV  L+K++YGL  AG  W
Sbjct:  316 WRVAMQAEYDSLTKSGAWTLTDRPHGKNVIGCRWVFVKKYDETGKLEKYKARLVAQGCSQKPGEDFELTYAPVVRHTTIRLILSLAAQQKLLVNHIDVVAAYLNGELEEELYMRQPEGFVDKTKPNKVCRLQKSLYGLKQAGRYW 460          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 108 bits (270), Expect = 1.150e-24
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKK--VGLLKKAMYGLVHAG 420
            W  AIA+EM    S G + +VE PK   ++G++ VF  K + +G+IE YK RLVAQG  ++ GI + E+ +P    ASIR++L++ A   WE  Q+DV  VY+  D+EEEIY+  P    +  K+  V  LK+ +YGL  +G
Sbjct:  760 WTEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHLVCRLKRPLYGLKQSG 901          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438I0K1_VITVI (Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I0K1_VITVI)

HSP 1 Score: 107 bits (268), Expect = 1.860e-24
Identity = 56/145 (38.62%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDS--RKKVGLLKKAMYGLVHAGLLW 429
            W+ AI  EM+       W++V+ PK K  +G + VF  K   DG IE+YK RLVA+G  +  GI Y+E+ +P     SIR++LS+     W   QLDV   ++  D+EEE++++LP  + +   +KKV  LKK++YGL      W
Sbjct:  108 WRSAIQEEMNALLKNRTWEIVDLPKEKKTMGCKWVFTIKCKPDGSIERYKVRLVAKGFTQTYGIDYQETFAPVAKINSIRILLSLTVHFNWPLHQLDVKNAFLNGDLEEEVFMDLPSGFEEKLEKKKVYRLKKSLYGLKQPPRAW 252          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 107 bits (268), Expect = 2.140e-24
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYR-DSRKKVGLLKKAMYGLVHAGLLW 429
            W+ A+  EM        W +V+ PK K V+G R +F  K+  DGKI++YK RLVAQG  +  GI YEE+ +P     SIR+++S+ A L W+  QLDV   ++   +EEE+Y++LP  +  ++   V  L K++YGL  +   W
Sbjct:  864 WRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPRAW 1007          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A5B683_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B683_VITVI)

HSP 1 Score: 107 bits (266), Expect = 3.890e-24
Identity = 57/145 (39.31%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    1 WKRAIAREMDEQTSRGVWQVVERPKRKTVLGTRVVF*RKIDKDGKIEKYKCRLVAQGCRKIKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSR--KKVGLLKKAMYGLVHAGLLW 429
            WK A+  EM+     G W+VV+ P+ K V+G + VF  K   DG +E+YK RLVA+G  +  GI Y+E+ +P     SIR++LS+     W   QLDV  V++  D+EEE+++  P  + +S   +KV  LKK++YGL  +   W
Sbjct:  501 WKLAVFEEMNALKKNGTWEVVDLPREKKVVGCKWVFTIKSKADGSVERYKARLVAKGFTQTYGIDYQETFAPVAKINSIRVLLSLTVNSNWPLHQLDVKNVFLNGDLEEEVFMSPPPGFEESFGVRKVCKLKKSLYGLKRSPRAW 645          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RGT1_CAJCA5.590e-2938.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI4.880e-2840.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI6.700e-2840.28Retrovirus-related Pol polyprotein from transposon... [more]
A5BCC7_VITVI1.710e-2740.28Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A0A9Y7J8_LYGHE3.470e-2737.75Retrovirus-related Pol polyprotein from transposon... [more]
W8BPA6_CERCA2.760e-2540.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H6Z2_9APHY1.150e-2441.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A438I0K1_VITVI1.860e-2438.62Long-chain-fatty-acid--[acyl-carrier-protein] liga... [more]
A0A151T5R4_CAJCA2.140e-2438.89Retrovirus-related Pol polyprotein from transposon... [more]
A5B683_VITVI3.890e-2439.31Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88997contigH-elongata_contig88997:2122..2553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size192
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.349848-UTR-H-elongata_contig88997:2121..23611622931291.349848-UTR-H-elongata_contig88997:2121..2361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88997 2122..2361 +
1691679776.0416784-UTR-H-elongata_contig88997:2121..23611691679776.0416784-UTR-H-elongata_contig88997:2121..2361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88997 2122..2361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.3619218-CDS-H-elongata_contig88997:2361..25531622931291.3619218-CDS-H-elongata_contig88997:2361..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88997 2362..2553 +
1691679776.0507336-CDS-H-elongata_contig88997:2361..25531691679776.0507336-CDS-H-elongata_contig88997:2361..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88997 2362..2553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88997.16409.1prot_H-elongata_contig88997.16409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88997 2362..2553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88997.16409.1

>prot_H-elongata_contig88997.16409.1 ID=prot_H-elongata_contig88997.16409.1|Name=mRNA_H-elongata_contig88997.16409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKKVGLLK
KAMYGLVHAGLLW*
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mRNA from alignment at H-elongata_contig88997:2122..2553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88997.16409.1 ID=mRNA_H-elongata_contig88997.16409.1|Name=mRNA_H-elongata_contig88997.16409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig88997:2122..2553+ (Himanthalia elongata Himel1 dioecious)
TGGAAAAGGGCGATCGCGCGCGAGATGGATGAGCAAACTTCTCGAGGCGT GTGGCAGGTGGTGGAGCGCCCAAAAAGGAAGACGGTGTTGGGCACGAGAG TAGTTTTCTAGCGCAAAATCGATAAGGATGGAAAGATCGAGAAGTATAAA TGTCGTCTCGTGGCGCAGGGTTGTAGGAAGATCAAAGGCATACACTACGA GGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCA GCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCAACATG GTCTACATGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCCCGGA GGCATACCGTGACTCCAGGAAGAAAGTCGGCCTACTAAAGAAGGCAATGT ACGGACTCGTCCACGCCGGGCTGCTGTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig88997:2122..2553+

>mRNA_H-elongata_contig88997.16409.1 ID=mRNA_H-elongata_contig88997.16409.1|Name=mRNA_H-elongata_contig88997.16409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig88997:2122..2553+ (Himanthalia elongata Himel1 dioecious)
ATGGTACTCAGCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGA
CGTCAACATGGTCTACATGGAGGCCGATGTGGAGGAGGAGATCTACGTTG
AGCTCCCGGAGGCATACCGTGACTCCAGGAAGAAAGTCGGCCTACTAAAG
AAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTAAATGGTACT
CAGCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCAACA
TGGTCTACATGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCCCG
GAGGCATACCGTGACTCCAGGAAGAAAGTCGGCCTACTAAAGAAGGCAAT
GTACGGACTCGTCCACGCCGGGCTGCTGTGGTAA
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