prot_H-elongata_contig88271.16356.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88271.16356.1
Unique Nameprot_H-elongata_contig88271.16356.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length285
Homology
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BLAST of mRNA_H-elongata_contig88271.16356.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 5.300e-87
Identity = 161/286 (56.29%), Postives = 197/286 (68.88%), Query Frame = 0 
Query:    1 MVPVAEAGYNRTRRVCVLCSAHLMAGDHTCPARYAIAIATPRADAYHKHGAIRHLSAAMESAAKKTRSGGEGGTRVGAEAVGEKPAIVGPLAALERVHGGPKALFSELVPMLSTEVPLDVCAHACQLVGASLLLASRMPSTETWVKLVVSIPHTAVDGLLECLHVAPARVKASRALFYAAKAP-PPGSGGALLEARSGVQIILDVLKSLPATTEPSVTPPASSASRLALRSLREWLCATLMLVVAGRPRAARALVASGGVALLCRQLEVGPTGVGVHACGVLTCAL 285
            ++ V+E GY R RR C  C+AH+ AG+++C ARYA+AIATP AD YHK  A+RHLSAAME AAKKT                    + GPL+A++RVHGG  A+F  LVPM+STEVPLDVC HACQL+GASL +ASR  S +TWV LV  IP   VDGLLECL VAPAR KA+RALFYAAK P   G+GG L+E+R GV I+L+VL+SLP      + PP ++A  +  + LR WLCATL  V+A RPRA +A +A  G+ LLCRQL  GP  + VH CGVL  AL
Sbjct:   29 LIHVSEPGYERPRRACQTCAAHIAAGEYSCNARYALAIATPGADTYHKQAAVRHLSAAMEDAAKKTVQSXXXXXXX----XXXXXXVRGPLSAIQRVHGGTPAVFEALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPKTWVDLVKVIPEGGVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIMLEVLESLP------LAPPPTAA--VETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLVAGPADIAVHVCGVLASAL 302
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BLAST of mRNA_H-elongata_contig88271.16356.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 7.240e-87
Identity = 160/286 (55.94%), Postives = 197/286 (68.88%), Query Frame = 0 
Query:    1 MVPVAEAGYNRTRRVCVLCSAHLMAGDHTCPARYAIAIATPRADAYHKHGAIRHLSAAMESAAKKTRSGGEGGTRVGAEAVGEKPAIVGPLAALERVHGGPKALFSELVPMLSTEVPLDVCAHACQLVGASLLLASRMPSTETWVKLVVSIPHTAVDGLLECLHVAPARVKASRALFYAAKAP-PPGSGGALLEARSGVQIILDVLKSLPATTEPSVTPPASSASRLALRSLREWLCATLMLVVAGRPRAARALVASGGVALLCRQLEVGPTGVGVHACGVLTCAL 285
            ++ V+E GY R RR C  C+AH+ AG+++C +RYA+AIATP AD YHK  A+RHLSAAME AAK     G                ++GPL+A++RVHGG  A+F  LVPM+STEVPLDVC HACQL+GASL +ASR  S ETWV LV  IP   VDGLLECL VAPAR KA+RALFYAAK P   G+GG L+E+R GV I+L+VL+SLP      + PP ++A  +  + LR WLCATL  V+A RPRA +A +A  G+ LLCRQL  GP  + VH CGVL  AL
Sbjct:  195 LMHVSEPGYERPRRACQTCAAHIAAGEYSCNSRYALAIATPGADMYHKQAAVRHLSAAMEDAAKNAVKSGXXXXXX----XXXXXXVLGPLSAIQRVHGGTPAVFQALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPETWVGLVKVIPEGCVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIMLEVLESLP------LAPPPTAA--VETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLAAGPADIAVHVCGVLASAL 468
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88271.16356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQZ1_9PHAE5.300e-8756.29FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FT64_ECTSI7.240e-8755.94E3 ubiquitin-protein ligase Nedd-4, putative n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 91..285
e-value: 1.0E-5
score: 26.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88271contigH-elongata_contig88271:201..2323 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88271.16356.1mRNA_H-elongata_contig88271.16356.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88271 201..2323 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88271.16356.1 ID=prot_H-elongata_contig88271.16356.1|Name=mRNA_H-elongata_contig88271.16356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
MVPVAEAGYNRTRRVCVLCSAHLMAGDHTCPARYAIAIATPRADAYHKHG
AIRHLSAAMESAAKKTRSGGEGGTRVGAEAVGEKPAIVGPLAALERVHGG
PKALFSELVPMLSTEVPLDVCAHACQLVGASLLLASRMPSTETWVKLVVS
IPHTAVDGLLECLHVAPARVKASRALFYAAKAPPPGSGGALLEARSGVQI
ILDVLKSLPATTEPSVTPPASSASRLALRSLREWLCATLMLVVAGRPRAA
RALVASGGVALLCRQLEVGPTGVGVHACGVLTCAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like