prot_H-elongata_contig8819.16348.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8819.16348.1
Unique Nameprot_H-elongata_contig8819.16348.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length186
Homology
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BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.570e-36
Identity = 89/189 (47.09%), Postives = 114/189 (60.32%), Query Frame = 0 
Query:    1 MGRIDKKAKHRRPVSETSAAINSRGQRKRALKKASLVRKKGLVELARRGPRGNQ-------VSTATKIADPLVPELTSHQDTLSNSTSNKGKRTLVAAELGQLNAVLATPSFQKDPFAAVQAHLRQTACPQASLVDRPVQASKKGYKYLRATNSAGSNEHPARITGLRTRVNERQRNAKPYKGRNAKMR 182
            MG+ID KAKHRRPVSE+  A+ SRGQRKRALKKASL++K GL     R  R ++       V+T  K   P  P L +        +SNKGKR+L+ +E+GQ+NAVL+ PSFQ+DPFAA+QAHLRQTA P   + D   +   KG       ++    +H     G      +R+  AKPYK RNAKMR
Sbjct:   19 MGKIDTKAKHRRPVSES--AVPSRGQRKRALKKASLIKKIGLTSKHVRQRRTDEDEKQVPSVATDEK-GIPSRPSLAAKGSAFQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMADCKARKPGKG-----KVSAKSVGQHAGETRG------DRKPKAKPYKARNAKMR 193
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BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Match: A0A835ZIC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.550e-10
Identity = 52/132 (39.39%), Postives = 70/132 (53.03%), Query Frame = 0 
Query:   11 RRPVSETSAAIN----SRGQRKRALKKASLVRKKGLV---------ELARR-GPRGNQVSTATKIADPLVPELTSHQDTLSNSTS--------NKGKRTLVAAELGQLNAVLATPSFQKDPFAAVQAHLRQT 120
            ++PVS   A  +    SRGQRKRA K+A+LVRK+ LV         E A+  G  G  + T T  A+         +   +   S        NKGKR++   EL QL AVLA  SF++DPFAA+QAH++ T
Sbjct:   16 KKPVSSAVAKPSDENLSRGQRKRATKRAALVRKRTLVTANVEQRKQEAAKGLGSMGGLMETLTGAAEDASGPSQKRKAAKAQLRSAPARRIITNKGKRSVAEKELAQLAAVLANESFKRDPFAAIQAHMKLT 147
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BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Match: B8BW59_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW59_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 4.580e-6
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 0 
Query:   13 PVSETSAAINSRGQRKR----------------ALKKASLVRKKGLVE---LARRGPRGNQ-VSTATKIADPLVPELTSHQDTLSNSTSNKGKRTLVAAELGQLNAVLATPSFQKDPFAAVQAHLRQTACPQA 125
            P +     + SRGQRKR                +L+ A+L  +KG ++     R    G   VST+TK +     + T++  + ++  +NK K+TL   E+  +  VL  PSFQ++PF A+Q HLR +  PQA
Sbjct:   37 PSATDGKEVLSRGQRKRLHKREQYLKREKMVLSSLRLAALEEQKGKIDGLDAIREALIGTSGVSTSTKTSKTSA-KSTAYAPSSNSCNTNKSKKTLANTEISHMGLVLEHPSFQQNPFVAIQQHLRNSLAPQA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8P4_ECTSI4.570e-3647.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIC9_9STRA9.550e-1039.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8BW59_THAPS4.580e-632.33Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028160Ribosome biogenesis protein Slx9-likePFAMPF15341SLX9coord: 58..120
e-value: 8.2E-8
score: 32.7
NoneNo IPR availablePANTHERPTHR31109:SF2PROTEIN FAM207Acoord: 67..147
NoneNo IPR availablePANTHERPTHR31109FAMILY NOT NAMEDcoord: 67..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8819contigH-elongata_contig8819:5181..6244 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8819.16348.1mRNA_H-elongata_contig8819.16348.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8819 4412..6244 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8819.16348.1 ID=prot_H-elongata_contig8819.16348.1|Name=mRNA_H-elongata_contig8819.16348.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MGRIDKKAKHRRPVSETSAAINSRGQRKRALKKASLVRKKGLVELARRGP
RGNQVSTATKIADPLVPELTSHQDTLSNSTSNKGKRTLVAAELGQLNAVL
ATPSFQKDPFAAVQAHLRQTACPQASLVDRPVQASKKGYKYLRATNSAGS
NEHPARITGLRTRVNERQRNAKPYKGRNAKMRVKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028160Slx9-like