prot_H-elongata_contig88177.16346.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88177.16346.1
Unique Nameprot_H-elongata_contig88177.16346.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length158
Homology
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.440e-24
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 143
            + R  +L+ GTFNV T A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  I    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:    3 KAREGDLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 133          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.480e-24
Identity = 62/146 (42.47%), Postives = 90/146 (61.64%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAP-TEEATEGQKVKYIEAL 157
            + R D+++ GTFNVRT A +G N +GH + ++++ C+   CDVIGLQET+R+G   I    Y V + G  +G K K+G +GVG+AIK  + + AG++    ECI+ RL+  R+ I     VTFVV YAP T   T G  V   ++L
Sbjct:  117 KAREDDVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSL 262          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.120e-23
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 143
            + R  +L+ GTFNVRT A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI  RL+  R+ I     +TFVV YAPTE
Sbjct:  142 KAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTE 272          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.590e-22
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 143
            + R  +L+ GTFNV T A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:  651 KAREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTE 781          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.780e-22
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 143
            + R  +L+ G FNVRT A +G   +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:   53 KAREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 183          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.180e-21
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 0
Query:   20 ELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE--EATEGQKV 151
            +L+ GTFNVRT A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    EC + RL+  R+ I     VTFVV YA TE    T G+ V
Sbjct:  819 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDV 954          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.900e-21
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 143
            + R  +L+ GTFN+RT   +  N +GH + ++++ C+A  CDV+GLQE +RDG   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:   19 KAREGDLSFGTFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 149          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.910e-21
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    2 RKATRMKHRTTRA-------RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 143
            R+A R +H T  A       + R  +L+ GTFNVRT A +G N +GH + ++++  +A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ RL+  R+ I +   V  VV YAPTE
Sbjct:  107 READRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTE 257          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.960e-20
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 143
            + R  +L+ GTF+VRT   +G N +GH +  +++  +A  CDVIGLQET+R+G   I    Y + + G  +G K K+G  GVG+AIK  +    G++    ECI+ RL+  R+ I     VTFVV YAPTE
Sbjct:  149 KAREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 279          
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KI90_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI90_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 5.970e-18
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 0
Query:   15 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISI 128
            + R  +L+ G FNVRT A +G N +GH + ++++ C+A  CDVIGLQET+R+G   I    Y + + G  +G K K+G +GVG+AIK  +    G++    ECI+ +L+  R+ +
Sbjct:   82 KAREGDLSFGKFNVRTPAYSGRNPIGHKVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPKLMKVRLQV 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE2.440e-2444.27Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KDU4_9PHAE8.480e-2442.47Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L660_9PHAE2.120e-2343.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE3.590e-2243.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE4.780e-2242.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0W6_9PHAE3.180e-2142.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6P8_9PHAE4.900e-2141.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A7_9PHAE5.910e-2140.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE1.960e-2041.98Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KI90_9PHAE5.970e-1839.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005135Endonuclease/exonuclease/phosphatasePFAMPF03372Exo_endo_phoscoord: 24..134
e-value: 3.5E-6
score: 26.7
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 17..158
e-value: 4.7E-11
score: 44.9
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 21..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88177contigH-elongata_contig88177:1623..2096 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88177.16346.1mRNA_H-elongata_contig88177.16346.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88177 1623..2114 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88177.16346.1 ID=prot_H-elongata_contig88177.16346.1|Name=mRNA_H-elongata_contig88177.16346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MRKATRMKHRTTRARCRLDELTVGTFNVRTEAVNGVNDMGHIDSLLRPCA
ARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIK
GEIVNKAGKDDIAFECINARLLNARISIKYNFVTFVVAYAPTEEATEGQK
VKYIEALN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
IPR036691Endo/exonu/phosph_ase_sf