mRNA_H-elongata_contig87762.16308.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 215 bits (548), Expect = 5.570e-67 Identity = 104/178 (58.43%), Postives = 134/178 (75.28%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
L+LAKGAKV++++NL+Q+ G VNGI+ EV ++V + P+ P YVV+K +GY+G +W ++RY CVPI+PV+T+W +GG RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM +R+ LGN P +KA LQEE RL LA +
Sbjct: 101 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQS 272
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 215 bits (548), Expect = 6.320e-65 Identity = 104/178 (58.43%), Postives = 134/178 (75.28%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
L+LAKGAKV++++NL+Q+ G VNGI+ EV ++V + P+ P YVV+K +GY+G +W ++RY CVPI+PV+T+W +GG RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM +R+ LGN P +KA LQEE RL LA +
Sbjct: 275 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQS 446
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 211 bits (538), Expect = 5.470e-60 Identity = 100/169 (59.17%), Postives = 129/169 (76.33%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEE 534
L+LAKGAKV++++NL+Q+ G VNGI+ EV ++V + P+ P YVV+K +GY+G +W ++RY CVPI+PV+T+W +GG RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM +R+ LGN P +KA LQEE
Sbjct: 1406 LYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 200 bits (509), Expect = 6.220e-59 Identity = 96/169 (56.80%), Postives = 125/169 (73.96%), Query Frame = 1
Query: 55 IVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
++++NL+Q+ G VNGI+ EV ++V + P+ P YVV+K +GY+G +W ++RY CVPI+PV+T+W +GG RT LPL+LCWAITMHKSQGQTL+KAVIDLG KEAC GL FVCLSRAK+L DL+VEPM +R+ LGN P +KA LQEE RL LA +
Sbjct: 1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQS 163
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT) HSP 1 Score: 145 bits (367), Expect = 7.370e-41 Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLA 555
+FL KGA+V++T NLW G NG + DIV+ + P+ P V++ + Y GP + +E CVPI P+ S EGG R LPL+L WA+T+HKSQG TLSKA ID+G+ E AG+++V +SR K L ++EPM RL+ L + L+ LQEEDRL LA
Sbjct: 13 VFLPKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQLA 181
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: UPI00106B9E63 (uncharacterized protein LOC114530406 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B9E63) HSP 1 Score: 144 bits (363), Expect = 3.540e-39 Identity = 75/180 (41.67%), Postives = 108/180 (60.00%), Query Frame = 1
Query: 25 TLFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADTI 564
TL +AK A+V++T NLW AG NG+ ++DI+Y + + P P VV+K D Y GP + CVPI+P+ S + HE R LPL L WA+T+HKSQG T+ K +D+G+KE G+++V LSR +KL+ +++EPMP +RLS + L L EE RL+ LA +
Sbjct: 112 TLLIAKKARVMLTMNLWPSAGLCNGVTGYIEDIIYAQSQEPPLLPTAVVVKFDNYIGPSFSTTPC---CVPISPITVSVNLNNVIHE-----RQQLPLTLAWALTIHKSQGMTIDKLWVDIGKKEHSLGMSYVALSRVRKLSSMVIEPMPFDRLSSIKKSDTLHYRLIEEKRLENLAKNL 283
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6S7LPR6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LPR6_PARCT) HSP 1 Score: 145 bits (365), Expect = 5.390e-39 Identity = 77/176 (43.75%), Postives = 107/176 (60.80%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLA 555
+FLAKGAKV++T NLW G NG V D +++ P+ P VV++ D Y GP + +D CVPI P+ S + HE R LPL+L WA+T+HKSQG TLSKA ID+G+ E AG+++V +SR K L+ ++EPM RL+ L + L+ L+EE+RL LA
Sbjct: 150 VFLAKGAKVMLTMNLWSNVGLCNGATGTVIDFIFESNHRPPDLPVGVVVQFDNYRGPSF--DDTQPSCVPICPITVSSQSGNGFHE-----RQQLPLRLAWALTIHKSQGLTLSKAWIDIGKSERTAGVSYVAISRVKTLSSCVIEPMTYERLTSLKSSANLQFRLEEENRLDRLA 318
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A6S7GPP1_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GPP1_PARCT) HSP 1 Score: 147 bits (372), Expect = 1.130e-37 Identity = 78/176 (44.32%), Postives = 106/176 (60.23%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLA 555
+FLAKGA+V++T NLW G NG + DIV+ + P+ P V++ + Y GP + +E CVPI P+ S EGG R LPL+L WA+T+HKSQG TLSKA ID+G+ E AG+++V +SR K L ++EPM RL+ L + L+ LQEEDRL LA
Sbjct: 1461 VFLAKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSLKSSANLQYRLQEEDRLNQLA 1629
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: A0A7D9EBM6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EBM6_PARCT) HSP 1 Score: 140 bits (353), Expect = 1.150e-37 Identity = 74/178 (41.57%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
+FLAKGA+V++T NLW G NG V DI+Y P+ P ++++ D Y GP + +D CVPI P+ S E G R LPL+L WA+++HKSQG TL K ID+G+ E AG+++V +SRAK L ++EPM RL+ L + L L+EE+RL A T
Sbjct: 109 VFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPVAIIVEFDNYRGPVF--DDNKPSCVPICPITVS-----SQTEIGFHERQQLPLRLAWALSIHKSQGLTLPKVWIDIGKSERTAGVSYVAISRAKTLASCVIEPMTYERLTSLKSSANLPYRLEEENRLDQFAQT 279
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Match: UPI001F03AE50 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03AE50) HSP 1 Score: 139 bits (349), Expect = 1.760e-37 Identity = 72/178 (40.45%), Postives = 107/178 (60.11%), Query Frame = 1
Query: 28 LFLAKGAKVIVTRNLWQEAGYVNGIQREVQDIVYDEGKASPEQPGYVVMKLDGYTGPQWPDEDRYGDCVPIAPVETSWSAPGQDHEGGITTRT*LPLKLCWAITMHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSRLGNKPVLKAHLQEEDRLKGLADT 561
+FLAKGA+V++T NLW G NG +V DI++ + P+ P V+++ + Y GP + + + CVPI P+ S E G R LPL+L WA+T+HKSQG TL KA ID+G+ E AG+++V +SR K + ++EPM RL+ L + L+ ++EE+RL LA T
Sbjct: 75 VFLAKGARVMLTMNLWSTVGLCNGATGKVVDIIFHDNHQPPDLPIAVIIEFENYRGPAFNVDKPF--CVPICPITVS-----SQLETGYHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSILSCVIEPMTYERLTSLKSSANLQYRIEEENRLDSLAQT 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87762.16308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87762.16308.1 >prot_H-elongata_contig87762.16308.1 ID=prot_H-elongata_contig87762.16308.1|Name=mRNA_H-elongata_contig87762.16308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp MHKSQGQTLSKAVIDLGEKEACAGLAFVCLSRAKKLTDLLVEPMPSNRLSback to top mRNA from alignment at H-elongata_contig87762:1796..2359+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87762.16308.1 ID=mRNA_H-elongata_contig87762.16308.1|Name=mRNA_H-elongata_contig87762.16308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=564bp|location=Sequence derived from alignment at H-elongata_contig87762:1796..2359+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87762:1796..2359+ >mRNA_H-elongata_contig87762.16308.1 ID=mRNA_H-elongata_contig87762.16308.1|Name=mRNA_H-elongata_contig87762.16308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig87762:1796..2359+ (Himanthalia elongata Himel1 dioecious)back to top |