prot_H-elongata_contig87221.16267.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig87221.16267.1
Unique Name	prot_H-elongata_contig87221.16267.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	67

Homology

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A6H5KHU6_9PHAE (Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.920e-35
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0

Query:    2 VRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMVS 60
            V LSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTT LETGMDILFFWVARMVS
Sbjct:    2 VCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVS 60

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: D8LT18_ECTSI (Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT18_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.010e-30
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0

Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            QV LSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTT LETGMDILFFWVARMV
Sbjct:  573 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMV 631

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0C2H4_PARTE (Valine--tRNA ligase n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0C2H4_PARTE)

HSP 1 Score: 108 bits (271), Expect = 3.970e-26
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0

Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            Q++LSQDEDVLDTWFSSGLFPFS FGWPDV+  D KAFFP T LETG DILFFWVA+MV
Sbjct:  555 QIKLSQDEDVLDTWFSSGLFPFSTFGWPDVNHPDFKAFFPNTILETGWDILFFWVAKMV 613

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A5J4YUZ1_PORPP (Valine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUZ1_PORPP)

HSP 1 Score: 108 bits (270), Expect = 5.420e-26
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0

Query:    3 RLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
             L QDEDVLDTWFSSGLFPFSVFGWPD+DSEDL+AF+PT  LETG DILFFWVARMV
Sbjct:  600 ELVQDEDVLDTWFSSGLFPFSVFGWPDMDSEDLQAFYPTNMLETGHDILFFWVARMV 656

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A6V1PAS2_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PAS2_HETAK)

HSP 1 Score: 107 bits (268), Expect = 1.010e-25
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0

Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            QV L+QDEDVLDTWFSSGLFPFSVFGWP+  ++DLKAF+PTT LETGMDILFFWVARMV
Sbjct:  591 QVELAQDEDVLDTWFSSGLFPFSVFGWPN-PTDDLKAFYPTTLLETGMDILFFWVARMV 648

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A7R9VUK8_9STRA (Valine--tRNA ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VUK8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.580e-25
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 0

Query:    2 VRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            V L +DEDVLDTWFSSGLFPFSVFGWPD +++DL+AF+PT+ LETG+DILFFWVARMV
Sbjct:   18 VVLERDEDVLDTWFSSGLFPFSVFGWPD-ETDDLEAFYPTSLLETGLDILFFWVARMV 74

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A482SF60_9ARCH (Valine--tRNA ligase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF60_9ARCH)

HSP 1 Score: 103 bits (258), Expect = 1.690e-25
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0

Query:    2 VRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            + L QDEDVLDTWFSSGLFPFSVFGWP+ +++D KAFFPTT LETG+DILFFWVARMV
Sbjct:  122 ISLIQDEDVLDTWFSSGLFPFSVFGWPE-ETDDFKAFFPTTLLETGLDILFFWVARMV 178

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A7S0BN81_9RHOD (Valine--tRNA ligase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BN81_9RHOD)

HSP 1 Score: 101 bits (251), Expect = 1.700e-25
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0

Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            ++ L QDEDVLDTWFSSGLFPFSVFGWP+ +++DL+ FFPTT LETG DILFFWVARMV
Sbjct:   58 ELTLEQDEDVLDTWFSSGLFPFSVFGWPE-ETKDLQGFFPTTLLETGHDILFFWVARMV 115

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A1B0G7V7_GLOMM (Valine--tRNA ligase n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0G7V7_GLOMM)

HSP 1 Score: 107 bits (266), Expect = 1.880e-25
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0

Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            +V L QDEDVLDTWFSSGLFPFSVFGWPD +++DLK FFPTTFLETG DILFFWVARMV
Sbjct:  575 KVVLQQDEDVLDTWFSSGLFPFSVFGWPD-ETDDLKTFFPTTFLETGHDILFFWVARMV 632

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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A3P6REM3_DIBLA (Valine--tRNA ligase n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6REM3_DIBLA)

HSP 1 Score: 99.4 bits (246), Expect = 2.180e-25
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0

Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 59
            ++ L QDEDVLDTWFSS LFP SVFGWP+ DS D +AF+P T LETG DILFFWVARMV
Sbjct:   14 EIHLIQDEDVLDTWFSSQLFPMSVFGWPNTDSSDFRAFYPGTLLETGHDILFFWVARMV 72

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot

BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KHU6_9PHAE	5.920e-35	96.61	Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 13...	[more]
D8LT18_ECTSI	1.010e-30	96.61	Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus...	[more]
A0C2H4_PARTE	3.970e-26	81.36	Valine--tRNA ligase n=1 Tax=Paramecium tetraurelia...	[more]
A0A5J4YUZ1_PORPP	5.420e-26	85.96	Valine--tRNA ligase n=1 Tax=Porphyridium purpureum...	[more]
A0A6V1PAS2_HETAK	1.010e-25	84.75	Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T...	[more]
A0A7R9VUK8_9STRA	1.580e-25	79.31	Valine--tRNA ligase (Fragment) n=1 Tax=Pseudictyot...	[more]
A0A482SF60_9ARCH	1.690e-25	81.03	Valine--tRNA ligase n=1 Tax=archaeon TaxID=1906665...	[more]
A0A7S0BN81_9RHOD	1.700e-25	77.97	Valine--tRNA ligase (Fragment) n=1 Tax=Rhodosorus ...	[more]
A0A1B0G7V7_GLOMM	1.880e-25	84.75	Valine--tRNA ligase n=6 Tax=Glossina TaxID=7393 Re...	[more]
A0A3P6REM3_DIBLA	2.180e-25	74.58	Valine--tRNA ligase n=1 Tax=Dibothriocephalus latu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002303	Valine-tRNA ligase	PRINTS	PR00986	TRNASYNTHVAL	coord: 39..57 score: 62.57 coord: 7..28 score: 72.22
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620		coord: 3..60 e-value: 1.2E-23 score: 84.9
IPR002300	Aminoacyl-tRNA synthetase, class Ia	PFAM	PF00133	tRNA-synt_1	coord: 3..59 e-value: 1.2E-21 score: 76.7
None	No IPR available	PANTHER	PTHR11946	VALYL-TRNA SYNTHETASES	coord: 2..60
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..56
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..36
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 57..66
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 4..62

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig87221	contig	H-elongata_contig87221:1368..1568 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig87221.16267.1	mRNA_H-elongata_contig87221.16267.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig87221 1368..1568 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig87221.16267.1 ID=prot_H-elongata_contig87221.16267.1|Name=mRNA_H-elongata_contig87221.16267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDI
LFFWVARMVSHHSMPH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002303	Valyl-tRNA_ligase
IPR014729	Rossmann-like_a/b/a_fold
IPR002300	aa-tRNA-synth_Ia