mRNA_H-elongata_contig87146.16263.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87146.16263.1
Unique NamemRNA_H-elongata_contig87146.16263.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87146.16263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87146contigH-elongata_contig87146:347..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size490
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931272.5826204-UTR-H-elongata_contig87146:346..5151622931272.5826204-UTR-H-elongata_contig87146:346..515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87146 347..515 +
1691679768.349441-UTR-H-elongata_contig87146:346..5151691679768.349441-UTR-H-elongata_contig87146:346..515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87146 347..515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931272.6038764-CDS-H-elongata_contig87146:515..8361622931272.6038764-CDS-H-elongata_contig87146:515..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87146 516..836 +
1691679768.359027-CDS-H-elongata_contig87146:515..8361691679768.359027-CDS-H-elongata_contig87146:515..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87146 516..836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87146.16263.1prot_H-elongata_contig87146.16263.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87146 516..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87146.16263.1

>prot_H-elongata_contig87146.16263.1 ID=prot_H-elongata_contig87146.16263.1|Name=mRNA_H-elongata_contig87146.16263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MNVPGQSIQFYGTASEGLATRTESNTSGSIFGQSAVVGQGIATAASGGSA
LLGTAEGTGVRVEEVVPVLGKRRRVLSRKEIKRRKSEKELKDFMVSLEEY
GSTLPGE
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mRNA from alignment at H-elongata_contig87146:347..836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87146.16263.1 ID=mRNA_H-elongata_contig87146.16263.1|Name=mRNA_H-elongata_contig87146.16263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=490bp|location=Sequence derived from alignment at H-elongata_contig87146:347..836+ (Himanthalia elongata Himel1 dioecious)
GTATGACTCCGCCCTTTCTCCTAAACCCTTGTCACTACAAAGTCTACTGG
CGAGATAAATACAACATTAGCCGAGAGGTTACTGCTACAAACACCATCAA
ACACGACAACGATACTACTCGATAATACTCCGTAATTCCACACAGCATAT
CATCGCTGGATGCAGTAAGATGAACGTGCCGGGTCAATCGATTCAATTTT
ATGGGACTGCCTCGGAGGGACTCGCAACGAGGACTGAATCAAACACGAGC
GGTTCTATTTTTGGCCAGAGTGCTGTTGTTGGCCAAGGTATCGCCACAGC
CGCGAGCGGGGGATCGGCATTGCTAGGCACAGCAGAGGGGACTGGAGTGA
GAGTGGAAGAGGTCGTACCCGTGTTGGGGAAAAGGCGCAGAGTTTTGTCC
CGAAAGGAAATTAAGCGACGGAAAAGCGAGAAGGAGCTGAAGGATTTCAT
GGTGTCCCTCGAGGAGTACGGATCTACACTCCCCGGAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig87146:347..836+

>mRNA_H-elongata_contig87146.16263.1 ID=mRNA_H-elongata_contig87146.16263.1|Name=mRNA_H-elongata_contig87146.16263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig87146:347..836+ (Himanthalia elongata Himel1 dioecious)
ATGAACGTGCCGGGTCAATCGATTCAATTTTATGGGACTGCCTCGGAGGG
ACTCGCAACGAGGACTGAATCAAACACGAGCGGTTCTATTTTTGGCCAGA
GTGCTGTTGTTGGCCAAGGTATCGCCACAGCCGCGAGCGGGGGATCGGCA
TTGCTAGGCACAGCAGAGGGGACTGGAGTGAGAGTGGAAGAGGTCGTACC
CGTGTTGGGGAAAAGGCGCAGAGTTTTGTCCCGAAAGGAAATTAAGCGAC
GGAAAAGCGAGAAGGAGCTGAAGGATTTCATGGTGTCCCTCGAGGAGTAC
GGATCTACACTCCCCGGAGAAATGAACGTGCCGGGTCAATCGATTCAATT
TTATGGGACTGCCTCGGAGGGACTCGCAACGAGGACTGAATCAAACACGA
GCGGTTCTATTTTTGGCCAGAGTGCTGTTGTTGGCCAAGGTATCGCCACA
GCCGCGAGCGGGGGATCGGCATTGCTAGGCACAGCAGAGGGGACTGGAGT
GAGAGTGGAAGAGGTCGTACCCGTGTTGGGGAAAAGGCGCAGAGTTTTGT
CCCGAAAGGAAATTAAGCGACGGAAAAGCGAGAAGGAGCTGAAGGATTTC
ATGGTGTCCCTCGAGGAGTACGGATCTACACTCCCCGGAGAA
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