prot_H-elongata_contig8650.16213.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8650.16213.1
Unique Nameprot_H-elongata_contig8650.16213.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length194
Homology
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.930e-32
Identity = 74/209 (35.41%), Postives = 115/209 (55.02%), Query Frame = 0
Query:   13 WKRAIAREMNGQTARGVWQVVE-CPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIK------------------------LEAKGFQ--KVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 194
            W+RA++ E  G    G +  V+  P+G+  + +R  F  K +K+G++E  K RLVA+GF Q+  + Y    SP P+ ASI+++  +                         L   GF+  K DPC+FR+++   VV++IV+YVDD+LVA + + D E+ +  L   F  K+LG+  ++ GC I RD  AGTL+  Q  YI ++ ERFDV
Sbjct:   15 WERAMSEEFEGHLGTGTFSFVDGAPEGRRPVSSRWCFSWKTNKEGKVENFKARLVARGFSQIPNVDYFHSSSPGPSSASIKLMLAVADEKGINLNHWDVKQAQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV 222          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438IJY3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IJY3_VITVI)

HSP 1 Score: 129 bits (325), Expect = 2.690e-31
Identity = 73/192 (38.02%), Postives = 109/192 (56.77%), Query Frame = 0
Query:    1 MGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQKVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 192
            + + + SS+  +W  A+  EM      GVW +VE PKG  ++G + +FK K D  G I + K  LVA+GF Q +GI Y+E FSP  ++ S R++  ++        VD C++ +   GT  +++V+YVDD+L+AS+      +  R L S F +KDLG  S+ LG  I RDR+ G L+  Q  YI  V  RF
Sbjct:  751 VSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKLIGCKWIFKIKRDSKGNIVRYKAHLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALE------NTVDQCIYLK-FSGTKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILRLSQKAYIDKVLSRF 935          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438FXS9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FXS9_VITVI)

HSP 1 Score: 118 bits (296), Expect = 1.960e-27
Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFG-------------IKLEAKGFQKVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 194
            EA +S +  +W  A+  EM   +   VW++V+ PKG   +G + VFK K D  G +E+CK RLVA+G+ Q +GI + E FSP   +   R+V               +K+      K + C++ ++ +G+  + +V+Y+DD+L+AS+         R L + F +KDLG+ S+ LG  I RDR+   L   Q  YI  V +RF++
Sbjct:  413 EALSSDKANEWLIAMRDEMQSMSDNDVWELVDLPKGYKPIGCKWVFKTKRDNKGNVERCKARLVARGYTQREGIDFTETFSPVSTKDYFRLVMALVAHFDLELHQMDVKIAFLNENKFNQCVYMKV-NGSKYIFMVLYIDDILLASSNVNLLNDTKRILSANFDMKDLGEASFVLGIEIYRDRSRNLLGLSQIAYINRVLKRFNM 616          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A5BKE8_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BKE8_VITVI)

HSP 1 Score: 116 bits (291), Expect = 9.580e-27
Identity = 71/200 (35.50%), Postives = 108/200 (54.00%), Query Frame = 0
Query:   14 KRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAK-----------------GFQK--VDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 194
            K+A+  EMN     GVW +VE P G  ++G + VFK K D   +IE+ K RLV +G+ Q +GI ++E FSP   + S R++  +K   K                 GF+   V+ C++ R+  G+  + +V+YVDD+L+AS       +    L + F +KDLG+ SY LG  I RDR  G LK  Q  YI+ + + F++
Sbjct:  617 KQAMDDEMNSMYMNGVWDLVELPHGCKLVGCKWVFKTKRDSSEKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAVKPSLKQALRQWYLKFDRIITQNGFKDNTVERCIYLRV-SGSSYIFLVLYVDDILLASNDSDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRTYIEKILKMFNM 815          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438FNN4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FNN4_VITVI)

HSP 1 Score: 113 bits (283), Expect = 1.100e-25
Identity = 70/205 (34.15%), Postives = 105/205 (51.22%), Query Frame = 0
Query:    1 MGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVF-------------GIKLEAKGFQKVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 192
            + + + SS+  +W  A+  EM      GVW +VE P+G   +G + +FK K D  G I + K RLVA+ F Q + I Y+E FSP  ++ S R++               +K        +D C++ +   G+  +++V+YVDD+L+AS+      +  R L S F +KDLG  S  LG  I RDR+ G L   Q  YI  V  RF
Sbjct:  487 VSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPEGVKSIGCKWIFKTKWDSKGNIVRYKARLVAKVFTQKEDIDYKETFSPVSSKDSFRIIMTLVAHYDLELHQMDVKTVFLNENTIDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASLVLGIQIHRDRSRGILGLSQKAYIDKVLSRF 690          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438EBZ3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EBZ3_VITVI)

HSP 1 Score: 112 bits (281), Expect = 2.170e-25
Identity = 73/203 (35.96%), Postives = 104/203 (51.23%), Query Frame = 0
Query:    1 MGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQKVDPCMFRRILHG---------TVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 194
            + +A +  E   W  A+  EM+      VW +VE P G   +G + VFK K D  G IE+ K RLVA+GF Q +GI Y E FSP   +  ++   G    + G Q V  C  ++ ++G         + V  +V+YVDD+L+A+  K    +  + L   F +KD+G+ SY LG  I RDR  G L   Q  YI  V ERF +
Sbjct:  734 LSQAMSCKESELWYNAMKDEMSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPLEEEVYMKQPEGFP-SSDGEQLV--CKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLFKNFDMKDMGEASYVLGIKIHRDRFKGILGLSQETYINKVLERFQM 933          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A5AFZ5_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AFZ5_VITVI)

HSP 1 Score: 112 bits (279), Expect = 3.950e-25
Identity = 65/204 (31.86%), Postives = 104/204 (50.98%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQK--------------VDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 192
            +A  SS   +W  A+  E        VW++V  P G   +G + +FK K D +G +E+ K RLVA+GF Q +GI ++E FSP   + S R++  ++   + + K              +D C++ +   G+  + +V+YVDD+L+A+          R L   F +KD+G  S+ LG  I RDR+ G L   Q  YI  V +R+
Sbjct:  794 QAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALQASRQWYFKFHQIIVSYGFEANLMDECVYHK-FSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDIGDASFILGIQIHRDRSRGILGLSQRTYIDKVLQRY 996          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A6L2K573_TANCI (Putative zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2K573_TANCI)

HSP 1 Score: 111 bits (278), Expect = 5.520e-25
Identity = 69/212 (32.55%), Postives = 112/212 (52.83%), Query Frame = 0
Query:   13 WKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGI---------KLEAK-------------------GFQK--VDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 194
            W+ A+  E+N  +   VW+ VE PKG   +  + VFK K+D +G IE+ K RLVA+G+ + + + Y+E FSP   + S+R++  +         +L+ K                    F K  VD C++ + + G+  +++V+YVDD+L+AS       ++ R L   F +KDLG+ SY +G  I +DR  G L   Q  YI+ V  RF++
Sbjct:  540 WREAMKDELNSMSKNNVWEFVELPKGAKPVRCKWVFKTKLDPNGNIERYKARLVAKGYTKKESVDYKETFSPISRKDSLRIIMALVAHFDLELHQLDVKTAFLNEDVYMAQPQVKKKHNFIKNQVDRCVYLK-MSGSNFIILVLYVDDILLASNNIDLLHESKRFLSRNFDMKDLGEASYVIGIEIHQDRANGKLGLSQKAYIERVLNRFNM 750          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438GBB1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GBB1_VITVI)

HSP 1 Score: 111 bits (277), Expect = 7.540e-25
Identity = 72/199 (36.18%), Postives = 102/199 (51.26%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQKVDPCMFRRILHG---------TVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 192
            +A +  E   W  A+  EM+      VW +VE P G   +G + VFK K D  G IE+ K RLVA+GF Q +GI Y E FSP   +  ++   G    + G Q V  C  ++ ++G         + V  +V+YVDD+L+A+  K    +  + L   F +KD+G+ SY +G  I RDR  G L   Q  YI  V ERF
Sbjct: 1204 QAMSCKESELWYNAMKDEMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPLEEEVYMKQPEGFP-SSDGEQLV--CKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERF 1399          
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438E557_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E557_VITVI)

HSP 1 Score: 110 bits (274), Expect = 1.470e-24
Identity = 72/214 (33.64%), Postives = 108/214 (50.47%), Query Frame = 0
Query:    1 MGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGI---------KLEAKG----------FQKVDPCMFRRILHGTV---VVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 192
            + + + SS+  +W  A+  EM      GVW +VE P+G   +G + +FK K D  G I + K RLVA+GF Q +GI Y+E FSP  ++ S R++  +         +++ K              V P  F       +   ++++V+YVDD+L+AS+      +  R L S F +KDLG  S+ LG  I RDR+ G L   Q  YI  V  RF
Sbjct:  218 VSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPEGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLWEQIIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRF 431          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVD4_9PHAE4.930e-3235.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A438IJY3_VITVI2.690e-3138.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FXS9_VITVI1.960e-2733.66Retrovirus-related Pol polyprotein from transposon... [more]
A5BKE8_VITVI9.580e-2735.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A438FNN4_VITVI1.100e-2534.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EBZ3_VITVI2.170e-2535.96Retrovirus-related Pol polyprotein from transposon... [more]
A5AFZ5_VITVI3.950e-2531.86Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A6L2K573_TANCI5.520e-2532.55Putative zinc finger, CCHC-type n=1 Tax=Tanacetum ... [more]
A0A438GBB1_VITVI7.540e-2536.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E557_VITVI1.470e-2433.64Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 29..98
e-value: 1.6E-14
score: 54.2
coord: 111..193
e-value: 9.5E-12
score: 45.1
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 3..97
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 31..172
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8650contigH-elongata_contig8650:7733..8506 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8650.16213.1mRNA_H-elongata_contig8650.16213.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8650 7721..8506 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8650.16213.1 ID=prot_H-elongata_contig8650.16213.1|Name=mRNA_H-elongata_contig8650.16213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKR
KIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLE
AKGFQKVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRS
CFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like