mRNA_H-elongata_contig1211.1619.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A6H5KRM5_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRM5_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.830e-45 Identity = 78/119 (65.55%), Postives = 96/119 (80.67%), Query Frame = 1
Query: 1 ATRHAELVAMDGALQSGANF---NECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGR---DSYNFPCRRGLMANEAVALFKRFYSRENAKAPEPKKRKISKQDM 339
ATRHAELVA+DG L++ + +ECD+FVTCEPCIMCAAALRD+KIK V+FGCSNDRFGGCGSVLSVH G + +PC GL+A+EA+ALFK+FYSR+N KAPEPK+RK + +
Sbjct: 62 ATRHAELVAIDGILRAQTDLCLLSECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPMSGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKTGQHEQ 180
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A4D9D5M2_9STRA (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5M2_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.890e-32 Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 4 TRHAELVAMDGALQSG---ANFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVH-AGRDSYNFPCRRGLMANEAVALFKRFYSRENAKAPEPKKRK 321
TRHAELV +D L G + F ECD++VTCEPCIMCA AL +KI+ V+FGC NDRFGGCGS+LSVH A + + GLM NEA+ LFK FY+REN +AP+ K+RK
Sbjct: 75 TRHAELVIVDEILARGNPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAITLFKSFYARENRQAPDTKRRK 184
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A835Z0K4_9STRA (tRNA specific adenosine deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K4_9STRA) HSP 1 Score: 125 bits (314), Expect = 2.100e-31 Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 ATRHAELVAMDGALQSGANFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGRD----SYNFPCRRGLMANEAVALFKRFYSRENAKA 300
ATRHAELVA+D AL G + C++FVTCEPCIMCAAAL M I V FGC NDRFGGCGS++SVH G ++ +P GL +AVALF++FY+REN KA
Sbjct: 72 ATRHAELVAIDRALAEGRSVTGCELFVTCEPCIMCAAALSQMGIGRVYFGCYNDRFGGCGSIVSVHEGSHMAPAAHTYPVVTGLRKEDAVALFRKFYARENGKA 175
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A482UKK3_9ARCH (Nucleoside deaminase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKK3_9ARCH) HSP 1 Score: 120 bits (300), Expect = 1.150e-29 Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 1 ATRHAELVAMDGALQSGAN---FNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGR--DSYNFPCRRGLMANEAVALFKRFYSRENAKAPEPKKRK 321
ATRHAELVA+D L G + F CD++VTCEPCIMCAAAL ++I V FGC NDRFGG GS+L +H +++ + G++ +EA+ +F+RFY REN +APE K+RK
Sbjct: 52 ATRHAELVAIDAILSHGHSVEAFKNCDLYVTCEPCIMCAAALAKLQIAKVFFGCHNDRFGGNGSILHIHTNPYGNAHAYDVESGVLKDEAIEIFQRFYDRENERAPESKRRK 163
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A2G5EVE9_AQUCA (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5EVE9_AQUCA) HSP 1 Score: 118 bits (296), Expect = 6.590e-29 Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 1 ATRHAELVAMD-----------GALQSGANFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGRDSYNFPCRRGLMANEAVALFKRFYSRENAKAPEP 309
ATRHAE+ A+D A++ F +CD++VTCEPCIMCA+AL + I++V +GC NDRFGGCGS+LS+H+ + F C G+MA+EAV+L +RFY + NA AP+P
Sbjct: 59 ATRHAEMEAIDELLKNWQDNGLSAMEISGKFFKCDLYVTCEPCIMCASALAILGIRSVFYGCGNDRFGGCGSILSLHSSQGK-GFECTGGIMASEAVSLLRRFYEQGNANAPKP 171
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A1Y1WLR4_9FUNG (Cytidine deaminase-like protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WLR4_9FUNG) HSP 1 Score: 117 bits (292), Expect = 2.550e-28 Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 1
Query: 4 TRHAELVAMDGALQSG---ANFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHA--GRDSYNFPCRRGLMANEAVALFKRFYSRENAKAPEPKKR 318
TRHAE+VA+D L SG +F + D++VT EPCIMCA+ALR +KI++V++GC NDRFGGC SVL+V+ G D +P G +EA+ + ++FY REN AP+P+K+
Sbjct: 54 TRHAEIVAIDRMLASGFQLEDFQQTDLYVTVEPCIMCASALRQIKIRSVVYGCGNDRFGGCDSVLNVNTDEGLDGTPYPAEGGFYKDEAILMLRKFYVRENTNAPQPRKK 163
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A7J6VUD2_THATH (tRNA-specific adenosine deaminase TAD2 n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VUD2_THATH) HSP 1 Score: 116 bits (290), Expect = 4.760e-28 Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 1 ATRHAELVAMD-----------GALQSGANFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGRDSYNFPCRRGLMANEAVALFKRFYSRENAKAPEP 309
ATRHAE+VA+D A + F+ CD++VTCEPCIMCA+AL + I+AV +GC+ND+FGGCGSVLS+H+ F C G+MA++A++L +RFY + N +P+P
Sbjct: 58 ATRHAEMVAIDDLLKFWQEIGLSATEIAGKFSRCDLYVTCEPCIMCASALSVLNIRAVYYGCANDKFGGCGSVLSLHS--QGKGFQCTSGIMASKAISLLQRFYQQGNPNSPKP 169
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A7S0EQJ1_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EQJ1_9EUKA) HSP 1 Score: 115 bits (288), Expect = 5.680e-28 Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1
Query: 4 TRHAELVAMDGALQSG---ANFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGRDSYN-FPCRRGLMANEAVALFKRFYSRENAKAPEPKKR 318
TRHAEL A+D L +G A EC ++VT EPCIMCA+ALR ++++ V+FGC ND+FGGCGSVLS+H+ S P GL EAVA+ + FY++EN APEP+KR
Sbjct: 30 TRHAELEAIDAMLTAGLSAAAIAECTLYVTVEPCIMCASALRQLRMRRVVFGCCNDKFGGCGSVLSIHSDELSDPPLPATGGLREEEAVAMLRLFYAQENHNAPEPQKR 138
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A4P9YYB9_9FUNG (Cytidine deaminase-like protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YYB9_9FUNG) HSP 1 Score: 115 bits (288), Expect = 9.610e-28 Identity = 61/112 (54.46%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 ATRHAELVAMDGALQSG---ANFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGRDSYNFPCRR---GLMANEAVALFKRFYSRENAKAPEPKKR 318
ATRHAELVA+D L SG + F CD++VT EPC+MCA+ALR + + V FGC N+RFGGCGSVLS+H S +P R G EAV +RFY REN APEPK++
Sbjct: 57 ATRHAELVAIDRILASGRPASIFMACDLYVTVEPCVMCASALRQLAFRNVYFGCRNERFGGCGSVLSIHTDHASDVYPSLRIHEGYYREEAVLWLRRFYLRENEHAPEPKRK 168
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Match: A0A7C8YGT1_OPUST (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YGT1_OPUST) HSP 1 Score: 115 bits (287), Expect = 1.540e-27 Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 1 ATRHAELVAMDGALQSGA-----------NFNECDMFVTCEPCIMCAAALRDMKIKAVIFGCSNDRFGGCGSVLSVHAGRD-------SYNFPCRRGLMANEAVALFKRFYSRENAKAPEPKK 315
ATRHAE+ A+DG L+ +EC ++VTCEPCIMC+AAL +K+K V +GC+NDRFGGCGS+LS+H+ S F C G+MA+EAV+LF+ FY R N AP+P++
Sbjct: 58 ATRHAEMEAIDGLLRQWLADGLLQSDVIQRLSECILYVTCEPCIMCSAALSFLKLKEVYYGCANDRFGGCGSILSLHSTSSERCIISGSKGFKCVGGIMASEAVSLFQSFYERGNPNAPKPRR 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1211.1619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1211.1619.1 >prot_H-elongata_contig1211.1619.1 ID=prot_H-elongata_contig1211.1619.1|Name=mRNA_H-elongata_contig1211.1619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp MLEEIATTSPVGVVSWPTKPLLSSRDFTRGRMRKHRNPRRGRYQSRTWTQback to top mRNA from alignment at H-elongata_contig1211:12075..14296+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1211.1619.1 ID=mRNA_H-elongata_contig1211.1619.1|Name=mRNA_H-elongata_contig1211.1619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2222bp|location=Sequence derived from alignment at H-elongata_contig1211:12075..14296+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1211:12075..14296+ >mRNA_H-elongata_contig1211.1619.1 ID=mRNA_H-elongata_contig1211.1619.1|Name=mRNA_H-elongata_contig1211.1619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig1211:12075..14296+ (Himanthalia elongata Himel1 dioecious)back to top |