mRNA_H-elongata_contig86026.16183.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86026.16183.1
Unique NamemRNA_H-elongata_contig86026.16183.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86026.16183.1 vs. uniprot
Match: D7FYU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU6_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.100e-55
Identity = 86/118 (72.88%), Postives = 100/118 (84.75%), Query Frame = 1 
Query:    1 RKKRGIAVKFVQETPGGYICDVDVRNFRTNSSHRIVMSKDQLKNISELVGKQVEVPALSMYTLKYMLDKGMKLDNTEGMIDASVFPVNYFTLKQLTYFHDDVLDKIVELCKQAPDLSE 354
            +KKR I V+FVQETP GYI  VDV+NF+  ++HRIVMSK+QL   SEL GK+VEV  L  Y +KYMLDKG+KLDNTEGMI+ASVFPVNYFTLKQL+YFHDDV +KIV LCK+APDLSE
Sbjct:   16 KKKRSITVQFVQETPAGYISVVDVKNFKATTNHRIVMSKEQLAQYSELAGKKVEVGDLMGYVMKYMLDKGIKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKIVALCKEAPDLSE 133
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BLAST of mRNA_H-elongata_contig86026.16183.1 vs. uniprot
Match: A0A835YV54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV54_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.370e-27
Identity = 49/103 (47.57%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:   16 IAVKFVQETPGGYICDVDVRNFRTNSSHRIVMSKDQLKNISELVGKQVEVPALSMYTLKYMLDKGMKLDNTEGMIDASVFPVNYFTLKQLTYFHDDVLDKIVE 324
            + +  +QET GG+I  ++V  FRT ++H+I+++K  L+++SE  GK V+V  +  + +++M+DK M LDNTEGMIDA VFPVNYFT  QL  FH ++ DK+ E
Sbjct:   68 VKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAE 170
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BLAST of mRNA_H-elongata_contig86026.16183.1 vs. uniprot
Match: W7TI06_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI06_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.740e-18
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    1 RKKRGIAVKFVQETPGGYICDVDVRNFRTNSSHRIVMSKDQLKNISELVGKQV-EVPALSMY--TLKYMLDKGMKLDNTEGMIDASVFPVNYFTLKQLTYFHDDVLDKI 318
            R +R I +  V E+ GGY+  V+V+NF+  + H ++ SK+  +    L GK   E+P    Y    K+++ KG+ L  TEGMIDA VFP+NYF++ QL  F DD ++ +
Sbjct:   63 RPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGV 171
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BLAST of mRNA_H-elongata_contig86026.16183.1 vs. uniprot
Match: A0A7S1K9Y0_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9Y0_9ALVE)

HSP 1 Score: 80.1 bits (196), Expect = 9.130e-16
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   16 IAVKFVQETPGGYICDV--DVRNFRTNSSHRIVMSKDQLKNISELVGKQVEVPALSMYTLKYMLDKGMKLDNTEGMIDASVFPVNYFTLKQLTYFHDDVLDKIVEL 327
            I V++V E  GG++ DV  D    +T + H + +      ++     ++V+   L  Y  K+MLD+ M +DNTEGMID+SVFPVNYF+  Q+ Y H+D  D++ ++
Sbjct:  146 IKVEYVDEWNGGWMSDVVIDYGGGKT-TKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADM 250
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BLAST of mRNA_H-elongata_contig86026.16183.1 vs. uniprot
Match: A0A0G4H3W5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3W5_VITBC)

HSP 1 Score: 80.1 bits (196), Expect = 4.200e-15
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   16 IAVKFVQETPGGYICDV--DVRNFRTNSSHRIVMSKDQLKNISELVGKQVEVPALSMYTLKYMLDKGMKLDNTEGMIDASVFPVNYFTLKQLTYFHDDVLDKIVEL 327
            I V++V E  GG++ DV  D    +T + H + +      ++     ++V+   L  Y  K+MLD+ M +DNTEGMID+SVFPVNYF+  Q+ Y H+D  D++ ++
Sbjct:  465 IKVEYVDEWNGGWMSDVVIDYGGGKT-TKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADM 569
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86026.16183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYU6_ECTSI1.100e-5572.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV54_9STRA6.370e-2747.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TI06_9STRA4.740e-1839.45Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1K9Y0_9ALVE9.130e-1637.74Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4H3W5_VITBC4.200e-1537.74Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86026contigH-elongata_contig86026:1682..2646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002530.1
Exons3
Model size360
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86026.16183.1prot_H-elongata_contig86026.16183.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86026 1682..2646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.5849018-CDS-H-elongata_contig86026:1681..17591622931263.5849018-CDS-H-elongata_contig86026:1681..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86026 1682..1759 -
1691679764.9031105-CDS-H-elongata_contig86026:1681..17591691679764.9031105-CDS-H-elongata_contig86026:1681..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86026 1682..1759 -
1622931263.59711-CDS-H-elongata_contig86026:1955..21291622931263.59711-CDS-H-elongata_contig86026:1955..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86026 1956..2129 -
1691679764.910766-CDS-H-elongata_contig86026:1955..21291691679764.910766-CDS-H-elongata_contig86026:1955..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86026 1956..2129 -
1622931263.616153-CDS-H-elongata_contig86026:2538..26461622931263.616153-CDS-H-elongata_contig86026:2538..2646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86026 2539..2646 -
1691679764.9197102-CDS-H-elongata_contig86026:2538..26461691679764.9197102-CDS-H-elongata_contig86026:2538..2646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86026 2539..2646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86026.16183.1

>prot_H-elongata_contig86026.16183.1 ID=prot_H-elongata_contig86026.16183.1|Name=mRNA_H-elongata_contig86026.16183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
RKKRGIAVKFVQETPGGYICDVDVRNFRTNSSHRIVMSKDQLKNISELVG
KQVEVPALSMYTLKYMLDKGMKLDNTEGMIDASVFPVNYFTLKQLTYFHD
DVLDKIVELCKQAPDLSEW*
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mRNA from alignment at H-elongata_contig86026:1682..2646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86026.16183.1 ID=mRNA_H-elongata_contig86026.16183.1|Name=mRNA_H-elongata_contig86026.16183.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig86026:1682..2646- (Himanthalia elongata Himel1 dioecious)
AGAAAGAAGAGAGGCATCGCAGTGAAATTCGTGCAAGAGACACCTGGCGG
CTACATCTGTGATGTGGACGTGAGAAACTTCAGGACAAACTCAAGCCATC
GGATAGTGGTGAGATTCGAGTTTAAAGTCAGTGCGATGCAGGTCCAGCCA
CTTCTTAACATTGTTACTTGAATGCATCACCTTTGCGGCGCGAACGACAC
GCATGAATCACCTGAAAGGTTAACCATTGGTATAAATTTTGAGGTACTTG
TTGGGCAGAAAAAGTGATGCAGTGGCTCTTCTTCATCCTTTTTTAGGTCT
TATGGGTAATTAAAATTAGTCGTAGGCGAAGCCAATTGCTACCCGCAGTT
TTAGCACGCTTTACGTTTTTTAGTTTTATGTTTTCAGTAAAAACCGTGGC
AAGCCTAGTTTGTTCGCAGTCAGGGCACGACATATTATTAGTAGTTTGAA
TCCTCTTGAAGTTGGAAAATACTAAACAAAAATAACTTTTCAAAATATGC
TGTTACCTGAACTCCAGATGTCTAAGGACCAGCTGAAAAACATTTCGGAG
CTGGTCGGGAAGCAAGTAGAAGTCCCAGCTTTGAGCATGTACACATTGAA
GTATATGCTGGACAAGGGGATGAAGCTGGATAACACGGAGGGAATGATCG
ATGCCTCCGTCTTCCCCGTGAATTACTTCACACTTAAGCAGGTATGGATC
GAGTAAGTCCAAACTTTATTTTGTATTTTCACCAGATCTTAAAGTTGATT
TTATAATTTATTCCAACATCCGACGTCCTCGACTGATTATACATCTTGGT
GCCACCACCAGGTGTTCGTCTCCTTAAATTTGTGTATTTCTGTAAAATCC
ACCCTGCCCACCGCCCGTGTGCGCCCGATATCTGCAGCTCACCTACTTCC
ACGATGATGTCCTAGATAAGATTGTGGAGCTCTGCAAGCAAGCCCCAGAC
TTGTCGGAATGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig86026:1682..2646-

>mRNA_H-elongata_contig86026.16183.1 ID=mRNA_H-elongata_contig86026.16183.1|Name=mRNA_H-elongata_contig86026.16183.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig86026:1682..2646- (Himanthalia elongata Himel1 dioecious)
AGAAAGAAGAGAGGCATCGCAGTGAAATTCGTGCAAGAGACACCTGGCGG
CTACATCTGTGATGTGGACGTGAGAAACTTCAGGACAAACTCAAGCCATC
GGATAGTGAGAAAGAAGAGAGGCATCGCAGTGAAATTCGTGCAAGAGACA
CCTGGCGGCTACATCTGTGATGTGGACGTGAGAAACTTCAGGACAAACTC
AAGCCATCGGATAGTGATGTCTAAGGACCAGCTGAAAAACATTTCGGAGC
TGGTCGGGAAGCAAGTAGAAGTCCCAGCTTTGAGCATGTACACATTGAAG
TATATGCTGGACAAGGGGATGAAGCTGGATAACACGGAGGGAATGATCGA
TGCCTCCGTCTTCCCCGTGAATTACTTCACACTTAAGCAGATGTCTAAGG
ACCAGCTGAAAAACATTTCGGAGCTGGTCGGGAAGCAAGTAGAAGTCCCA
GCTTTGAGCATGTACACATTGAAGTATATGCTGGACAAGGGGATGAAGCT
GGATAACACGGAGGGAATGATCGATGCCTCCGTCTTCCCCGTGAATTACT
TCACACTTAAGCAGCTCACCTACTTCCACGATGATGTCCTAGATAAGATT
GTGGAGCTCTGCAAGCAAGCCCCAGACTTGTCGGAATGGTGACTCACCTA
CTTCCACGATGATGTCCTAGATAAGATTGTGGAGCTCTGCAAGCAAGCCC
CAGACTTGTCGGAATGGTGA
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