mRNA_H-elongata_contig85973.16178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85973.16178.1
Unique NamemRNA_H-elongata_contig85973.16178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85973.16178.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.720e-15
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:    1 VIQDVATRWWFTCSMVARLLELKVAIDKNEAADKLNPLLSAADWTVLELILSILEPFRHTQTLLEGRKYVTGSFVLPFIYNLCNSLEDAIDDL 279
            V+QDV TRWW T   + RL+ L+  I ++E  D   PLL   DW VL+L+ S+L+PF   Q  LE  K VT   V P+I +L + L++A++ L
Sbjct:  156 VVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERL 248
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BLAST of mRNA_H-elongata_contig85973.16178.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-14
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 VIQDVATRWWFTCSMVARLLELKVAIDKNEAADKLNPLLSAADWTVLELILSILEPFRHTQTLLEGRKYVTGSFVLPFIYNLCNSLEDAIDDL 279
            V+QDV TRWW T + + RLL L+  I ++E  D + PLL   DW VL+++  + +PF  +Q   E  K VT S V+P+I +L + L++A++ L
Sbjct:  200 VVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERL 292
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BLAST of mRNA_H-elongata_contig85973.16178.1 vs. uniprot
Match: A0A8C5FDW4_GADMO (BED-type domain-containing protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FDW4_GADMO)

HSP 1 Score: 58.5 bits (140), Expect = 6.230e-8
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 VIQDVATRWWFTCSMVARLLELKVAIDKNEAADKLNPL-LSAADWTVLELILSILEPFRHTQTLLEGRKYVTGSFVLPFIYNLCNSLEDAIDD 276
            +I D ATRW  T  M+ R  + +  +       KL+ L LS+ +WT++E +  +L+PF+     L    Y T S VLP  Y L   L+ +IDD
Sbjct:  326 LINDCATRWNSTYDMICRAADQQAPVAAVIMEKKLSRLELSSVEWTLMEKVKDVLQPFKVATQALSTEAYPTASAVLPLQYVLLKQLKPSIDD 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85973.16178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE1.720e-1543.01Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE1.050e-1440.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A8C5FDW4_GADMO6.230e-835.48BED-type domain-containing protein n=2 Tax=Gadus m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85973contigH-elongata_contig85973:205..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue4.5e-16
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.2644055-CDS-H-elongata_contig85973:204..4891622931263.2644055-CDS-H-elongata_contig85973:204..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85973 205..489 -
1691679764.8209512-CDS-H-elongata_contig85973:204..4891691679764.8209512-CDS-H-elongata_contig85973:204..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85973 205..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85973.16178.1prot_H-elongata_contig85973.16178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85973 205..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85973.16178.1

>prot_H-elongata_contig85973.16178.1 ID=prot_H-elongata_contig85973.16178.1|Name=mRNA_H-elongata_contig85973.16178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
VIQDVATRWWFTCSMVARLLELKVAIDKNEAADKLNPLLSAADWTVLELI
LSILEPFRHTQTLLEGRKYVTGSFVLPFIYNLCNSLEDAIDDLNE
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mRNA from alignment at H-elongata_contig85973:205..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85973.16178.1 ID=mRNA_H-elongata_contig85973.16178.1|Name=mRNA_H-elongata_contig85973.16178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig85973:205..489- (Himanthalia elongata Himel1 dioecious)
GTGATCCAGGACGTGGCAACCAGGTGGTGGTTCACATGCAGCATGGTAGC
GCGATTGTTAGAGCTTAAGGTAGCAATCGACAAGAACGAGGCGGCGGACA
AGCTGAACCCGCTGCTTTCGGCGGCAGACTGGACGGTTCTTGAGCTGATA
TTGTCTATCCTGGAACCGTTCAGGCACACCCAGACTTTGCTGGAGGGCCG
CAAGTATGTGACGGGTAGCTTCGTCTTACCCTTTATCTACAACCTTTGCA
ACAGCCTTGAGGACGCAATCGACGACCTCAACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig85973:205..489-

>mRNA_H-elongata_contig85973.16178.1 ID=mRNA_H-elongata_contig85973.16178.1|Name=mRNA_H-elongata_contig85973.16178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig85973:205..489- (Himanthalia elongata Himel1 dioecious)
GTGATCCAGGACGTGGCAACCAGGTGGTGGTTCACATGCAGCATGGTAGC
GCGATTGTTAGAGCTTAAGGTAGCAATCGACAAGAACGAGGCGGCGGACA
AGCTGAACCCGCTGCTTTCGGCGGCAGACTGGACGGTTCTTGAGCTGATA
TTGTCTATCCTGGAACCGTTCAGGCACACCCAGACTTTGCTGGAGGGCCG
CAAGTATGTGACGGGTAGCTTCGTCTTACCCTTTATCTACAACCTTTGCA
ACAGCCTTGAGGACGCAATCGACGACCTCAACGAGGTGATCCAGGACGTG
GCAACCAGGTGGTGGTTCACATGCAGCATGGTAGCGCGATTGTTAGAGCT
TAAGGTAGCAATCGACAAGAACGAGGCGGCGGACAAGCTGAACCCGCTGC
TTTCGGCGGCAGACTGGACGGTTCTTGAGCTGATATTGTCTATCCTGGAA
CCGTTCAGGCACACCCAGACTTTGCTGGAGGGCCGCAAGTATGTGACGGG
TAGCTTCGTCTTACCCTTTATCTACAACCTTTGCAACAGCCTTGAGGACG
CAATCGACGACCTCAACGAG
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