mRNA_H-elongata_contig8586.16169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8586.16169.1
Unique NamemRNA_H-elongata_contig8586.16169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8586.16169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8586contigH-elongata_contig8586:5796..6169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007660.1
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931262.1907327-CDS-H-elongata_contig8586:5795..61671622931262.1907327-CDS-H-elongata_contig8586:5795..6167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8586 5796..6167 +
1691679764.299728-CDS-H-elongata_contig8586:5795..61671691679764.299728-CDS-H-elongata_contig8586:5795..6167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8586 5796..6167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8586.16169.1prot_H-elongata_contig8586.16169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8586 5796..6167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8586.16169.1

>prot_H-elongata_contig8586.16169.1 ID=prot_H-elongata_contig8586.16169.1|Name=mRNA_H-elongata_contig8586.16169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
VDSSSTNPNPDRPYLARALSNTESEDGAKSGCSASSGEPSPMPPLPPNVN
QLAKKDAHENVPLTARALSALSGQSGGGGGNEEEEQQVEEIRAAAVLELV
TSKRITPLGGVLSNIPCLRADHVS
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mRNA from alignment at H-elongata_contig8586:5796..6169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8586.16169.1 ID=mRNA_H-elongata_contig8586.16169.1|Name=mRNA_H-elongata_contig8586.16169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=374bp|location=Sequence derived from alignment at H-elongata_contig8586:5796..6169+ (Himanthalia elongata Himel1 dioecious)
GTCGATAGTTCCAGTACCAATCCCAATCCCGACAGGCCCTATTTGGCCCG
TGCCTTGAGCAACACCGAAAGCGAGGACGGTGCTAAAAGCGGGTGTAGCG
CTTCCAGTGGCGAGCCCTCCCCAATGCCCCCTTTGCCCCCCAATGTGAAT
CAGTTGGCGAAGAAGGACGCGCACGAAAATGTTCCGCTGACTGCTAGGGC
GCTTAGTGCTCTTTCAGGACAGAGCGGTGGCGGTGGGGGCAACGAAGAAG
AGGAACAGCAAGTCGAGGAGATTCGCGCCGCTGCGGTATTGGAGTTGGTA
ACGTCGAAGCGGATCACACCACTCGGCGGGGTGTTGTCAAATATTCCCTG
TCTCAGGGCCGATCACGTTTCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig8586:5796..6169+

>mRNA_H-elongata_contig8586.16169.1 ID=mRNA_H-elongata_contig8586.16169.1|Name=mRNA_H-elongata_contig8586.16169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig8586:5796..6169+ (Himanthalia elongata Himel1 dioecious)
GTCGATAGTTCCAGTACCAATCCCAATCCCGACAGGCCCTATTTGGCCCG
TGCCTTGAGCAACACCGAAAGCGAGGACGGTGCTAAAAGCGGGTGTAGCG
CTTCCAGTGGCGAGCCCTCCCCAATGCCCCCTTTGCCCCCCAATGTGAAT
CAGTTGGCGAAGAAGGACGCGCACGAAAATGTTCCGCTGACTGCTAGGGC
GCTTAGTGCTCTTTCAGGACAGAGCGGTGGCGGTGGGGGCAACGAAGAAG
AGGAACAGCAAGTCGAGGAGATTCGCGCCGCTGCGGTATTGGAGTTGGTA
ACGTCGAAGCGGATCACACCACTCGGCGGGGTGTTGTCAAATATTCCCTG
TCTCAGGGCCGATCACGTTTCTGTCGATAGTTCCAGTACCAATCCCAATC
CCGACAGGCCCTATTTGGCCCGTGCCTTGAGCAACACCGAAAGCGAGGAC
GGTGCTAAAAGCGGGTGTAGCGCTTCCAGTGGCGAGCCCTCCCCAATGCC
CCCTTTGCCCCCCAATGTGAATCAGTTGGCGAAGAAGGACGCGCACGAAA
ATGTTCCGCTGACTGCTAGGGCGCTTAGTGCTCTTTCAGGACAGAGCGGT
GGCGGTGGGGGCAACGAAGAAGAGGAACAGCAAGTCGAGGAGATTCGCGC
CGCTGCGGTATTGGAGTTGGTAACGTCGAAGCGGATCACACCACTCGGCG
GGGTGTTGTCAAATATTCCCTGTCTCAGGGCCGATCACGTTTCT
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