mRNA_H-elongata_contig85845.16166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85845.16166.1
Unique NamemRNA_H-elongata_contig85845.16166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Match: D8LIA5_ECTSI (Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.810e-16
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 RFSQVIDVKRQVAKVTRPELVGGAYDGCLDRFERGMSATRLREVFDELKSELVPLLKAIKAKVKYQGE 204
            +  +++ VKR VA+ TR EL GGAY+GCLD+FERGMS  RLREVF ELK+ LVPLL+AI+ KV  + +
Sbjct:  242 KLGKMVSVKRDVAEATRSEL-GGAYEGCLDQFERGMSTERLREVFGELKAGLVPLLRAIQEKVAKEDK 308
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BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Match: R1E666_EMIHU (Uncharacterized protein n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E666_EMIHU)

HSP 1 Score: 75.1 bits (183), Expect = 5.530e-14
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 RFSQVIDVKRQVAKVTRPELVGGAYDGCLDRFERGMSATRLREVFDELKSELVPLLKAIKAKVKYQGERLPPAVPSPAPSL 243
            + +++ ++K++VA VTRP L    YDG LD FERGM A RL E+F+EL++ LVPLL+AI AK         P+V +P PSL
Sbjct:  144 KLTEIFELKKEVAAVTRPALKSEPYDGALDAFERGMRAERLDEIFEELRAGLVPLLEAINAKKASD-----PSVDAPHPSL 219
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BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Match: A0A7S0DX94_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DX94_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 RFSQVIDVKRQVAKVTRPELVGGAYDGCLDRFERGMSATRLREVFDELKSELVPLLKAIKAK 186
            + +++ ++K++VA +TRP L    YDG LD FERGM A RL  +FDEL++ LVPLL AI AK
Sbjct:  171 KLTEIFELKKEVAALTRPALKDEPYDGALDAFERGMRAERLDVIFDELRTGLVPLLDAINAK 232
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BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Match: A0A7S1XPI5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPI5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.440e-10
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    4 FSQVIDVKRQVAKVTRPELV--GGAYDGCLDRFERGMSATRLREVFDELKSELVPLLKAIKA 183
              ++I+VK ++A   RP+L   G  YD  +D+FERGMSA RL EVF ELK+ LVPLL++++A
Sbjct:  148 LEEIIEVKNEIAAAQRPDLAAEGRLYDAHVDKFERGMSAERLDEVFSELKAGLVPLLRSVQA 209
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BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Match: A0A8J2X4W5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4W5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.000e-8
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   22 VKRQVAKVTRPEL--VGGAYDGCLDRFERGMSATRLREVFDELKSELVPLLKAIKAKVKYQGE--RLPPAV 222
            +KR+VA  TRP++   G  YDG LD FERGM+A+RL  +F + +  L PLLKA+ AK +   +   LPPA+
Sbjct:  165 LKREVAATTRPDVCAAGEPYDGALDAFERGMTASRLDAIFAKTREGLEPLLKAVLAKKRDAPDVDALPPAL 235
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BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Match: A0A7S0YX82_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YX82_9CRYP)

HSP 1 Score: 55.5 bits (132), Expect = 3.410e-7
Identity = 23/65 (35.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    4 FSQVIDVKRQVAKVTRPELVGGAYDGCLDRFERGMSATRLREVFDELKSELVPLLKAIKAKVKYQ 198
              +V +++R++   T+P++    YD  +D F+  M+A R++E+FD++K+EL PL+ +I AKV+ +
Sbjct:  105 LKEVFEMQREICSTTKPDMP--IYDAAIDMFDPKMTAPRIKEIFDQVKAELAPLISSIAAKVEAE 167
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BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Match: A0A5B8MP60_9CHLO (Thermostable carboxypeptidase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MP60_9CHLO)

HSP 1 Score: 48.9 bits (115), Expect = 9.230e-5
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 FSQVIDVKRQVAKVTRPELVGGAYDGCLDRFERGMSATRLREVFDELKSELVPLLKAI 177
             S+++ ++   AK   PE +   YD  +D+FERGM A+RL E+F+ +K+ LVPL++ I
Sbjct:  132 LSKIVQLRIDEAKAVAPEKL--PYDYQIDKFERGMKASRLAEIFETVKAGLVPLIEEI 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85845.16166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LIA5_ECTSI3.810e-1660.29Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus s... [more]
R1E666_EMIHU5.530e-1449.38Uncharacterized protein n=4 Tax=Emiliania huxleyi ... [more]
A0A7S0DX94_9EUKA1.110e-1153.23Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S1XPI5_9STRA3.440e-1051.61Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8J2X4W5_9STRA2.000e-847.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0YX82_9CRYP3.410e-735.38Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5B8MP60_9CHLO9.230e-541.38Thermostable carboxypeptidase n=2 Tax=Chloropicon ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85845contigH-elongata_contig85845:514..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D8LIA5
KEGG koko:K01299
EggNOG free text desc.Carboxypeptidase Taq (M32) metallopeptidase
EggNOG OGs2QQRM@2759,COG2317@1
EC3.4.17.19
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase M32, carboxypeptidase Taq metallopeptidase
Ec32 orthologEc-24_001420.1
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931261.9900088-CDS-H-elongata_contig85845:513..7561622931261.9900088-CDS-H-elongata_contig85845:513..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85845 514..756 +
1691679764.2635562-CDS-H-elongata_contig85845:513..7561691679764.2635562-CDS-H-elongata_contig85845:513..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85845 514..756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85845.16166.1prot_H-elongata_contig85845.16166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85845 514..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85845.16166.1

>prot_H-elongata_contig85845.16166.1 ID=prot_H-elongata_contig85845.16166.1|Name=mRNA_H-elongata_contig85845.16166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
RFSQVIDVKRQVAKVTRPELVGGAYDGCLDRFERGMSATRLREVFDELKS
ELVPLLKAIKAKVKYQGERLPPAVPSPAPSL
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mRNA from alignment at H-elongata_contig85845:514..756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85845.16166.1 ID=mRNA_H-elongata_contig85845.16166.1|Name=mRNA_H-elongata_contig85845.16166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig85845:514..756+ (Himanthalia elongata Himel1 dioecious)
CGATTTTCGCAGGTTATTGACGTGAAGCGTCAGGTAGCGAAGGTAACGAG
ACCGGAACTCGTTGGTGGCGCGTACGACGGGTGCCTGGACCGCTTCGAGA
GGGGCATGTCCGCGACCAGGCTACGAGAAGTTTTTGACGAGCTCAAGAGC
GAGCTGGTCCCGCTCCTCAAAGCCATCAAAGCGAAGGTAAAATATCAAGG
AGAACGCCTCCCGCCCGCCGTCCCGTCCCCTGCCCCATCTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig85845:514..756+

>mRNA_H-elongata_contig85845.16166.1 ID=mRNA_H-elongata_contig85845.16166.1|Name=mRNA_H-elongata_contig85845.16166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig85845:514..756+ (Himanthalia elongata Himel1 dioecious)
CGATTTTCGCAGGTTATTGACGTGAAGCGTCAGGTAGCGAAGGTAACGAG
ACCGGAACTCGTTGGTGGCGCGTACGACGGGTGCCTGGACCGCTTCGAGA
GGGGCATGTCCGCGACCAGGCTACGAGAAGTTTTTGACGAGCTCAAGAGC
GAGCTGGTCCCGCTCCTCAAAGCCATCAAAGCGAAGGTAAAATATCAAGG
AGAACGCCTCCCGCCCGCCGTCCCGTCCCCTGCCCCATCTCTACGATTTT
CGCAGGTTATTGACGTGAAGCGTCAGGTAGCGAAGGTAACGAGACCGGAA
CTCGTTGGTGGCGCGTACGACGGGTGCCTGGACCGCTTCGAGAGGGGCAT
GTCCGCGACCAGGCTACGAGAAGTTTTTGACGAGCTCAAGAGCGAGCTGG
TCCCGCTCCTCAAAGCCATCAAAGCGAAGGTAAAATATCAAGGAGAACGC
CTCCCGCCCGCCGTCCCGTCCCCTGCCCCATCTCTA
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