mRNA_H-elongata_contig8560.16146.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8560.16146.1
Unique NamemRNA_H-elongata_contig8560.16146.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 3.460e-106
Identity = 245/561 (43.67%), Postives = 302/561 (53.83%), Query Frame = 3
Query:  246 TVSTLRVHEGKVFKVIRTHCWKNYTLLTLSVKRRAALSGKGDARKLLEDDQCTSLHSLISEKRNSGQRVFLYNVGEWIKENYNKYVSNRVIGGFSYRIGLRRPRERIKIPPLNHDRKPRIRRFLIEISTSLSQEKKEEAVIVYMDERF------------LTDDDDILQNGIGRTSKKSFLRIIMGTCHSQVGIVGNTRYG*FSDSRRLVQA*AYG*RQAGDWVNGYG--GYRRDALAG*DCHRELPRCHDR---QHVHEMSKTTPSNSF*GEI*GQDNKYCFC*RLVLPRV*-RGGADA*KQL*RVQC*AF--A*IQVQEDHRLTRGNR*RRRREQEVHL*STSHGRVSSGKLKVR*GREQFRGSAENSSIFPAQISQKTHGESG-----------------------EVYKRARVAADLPPPPYMPSFQPMELF*QHDKQYVSFNF----TMGEVWEQGWKRWCGDFTWEGQ*GGWKPADFSKHVTHAIKEMNKWVVSDPILKDQMGALEAIPKSYKNDAPGHNEMRNDDCLEAQEKLELSAEMMEFVGDEDVDGDVEV 1787
            T STLRV + KVFKV R H W+   LLT S + R   SGK D RKLL+D QC +L + IS+K  +GQ+VF   V EWIKE  NK +SNR +GG  YRIG RR R RIKIPPLN DRK RIRRFL+E+S +L+QE+KEEAVIVYMDE F            LTDDD ++Q+G+GRTS K  LR+IM    ++ G +       F       +      +  G    G G  G    A       R     HD    +   E  +   + +F  +     NK      LVL       G DA   +       +  A ++  +  ++T         E+EV    TS   V S K   +            +  FP   S+   G SG                       E +   R    +  PPYMPSFQP+ELF QH KQYVSFNF    TM EVW Q  K W GD TWEGQ GGWKPAD SK V HA+KEMNKWV SDP+L+ QMGALE IP+SY++DAPGHN++ +DD +EAQE+LELSAE ME +GDED DGD EV
Sbjct:  128 TASTLRVGKDKVFKV-RAHWWEKTELLTSSAEGRGVSSGK-DGRKLLDDVQCANLRAFISDKHENGQQVFRRTVREWIKETCNKDLSNRAVGGLLYRIGYRRRRGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKG-LRMIMVHAITKGGALAAVDENNFPIPEGWFKP-----KDKGKGRQGAGSMGTEETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKY---GNKKMI---LVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITV--------EREV----TSSAGVRSKKYTFQ---------VPATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHAVKEMNKWVASDPVLRGQMGALEEIPESYEDDAPGHNDIVHDDGVEAQEQLELSAEFMECMGDEDADGDAEV 653          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.950e-46
Identity = 105/185 (56.76%), Postives = 127/185 (68.65%), Query Frame = 3
Query:  246 TVSTLRVHEGKVFKVIRTHCWKNYTLLTLSVKRRAALSGKGDARKLLEDDQCTSLHSLISEKRNSGQRVFLYNVGEWIKENYNKYVSNRVIGGFSYRIGLRRPRERIKIPPLNHDRKPRIRRFLIEISTSLSQEKKEEAVIVYMDERF------------LTDDDDILQNGIGRTSKKSFLRIIM 764
            T +TLRV + KVFKV R H W+   LL  S + R   SGK D RKLL+D QC SL + IS+K  +GQ+VF   V EWIKE  NK +SNR +GG  YRIG RR   RIKIPPLN DRK RIRRFL+E+S +L+QE+KEEAVIVYMDE F            LTDD+ ++Q+G+GRTS K  LR+IM
Sbjct:  128 TAATLRVGKDKVFKV-RAHWWEKTELLASSAEGRGVSSGK-DGRKLLDDVQCASLRAFISDKHENGQQVFRRTVREWIKERCNKDLSNRAVGGLLYRIGYRRRGGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKG-LRMIM 309          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.350e-41
Identity = 95/215 (44.19%), Postives = 127/215 (59.07%), Query Frame = 1
Query:  757 LLWVHAIPRWGSLVTLDTDNFPIPEG*FKRKHTGEGR--PGTGS--MGTEDTAEMLWQAKIATGNYHDAMTDNMFMK*VKPRLATVFKVKFRDKTISIAFVNASYYHGYNAEVRMPKSNSKGYNVELLREYKCKRITV*REVTGSAGVESKRYISKVLATGAFPQVNSKCGRGVSSSEVALRTRAFFQLKYPRKLMEKVEKFINALEWQLICPLP 1389
            ++ VHAI + G L  L  + FPI EG FK K     +  PG     M  E TAE LWQAK+ATG+YH+AMTD MFM+ +K RL   F  +F++K + +   NASY+H ++ EV++P++NSK YNVELLR+Y C    V RE  G A      Y  +V A G+ P  N K   GVS  E+A  TR +F+  +P+KL EK E ++    W LI   P
Sbjct:  231 MIMVHAITKHGPLAELQ-EGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAA----EYNFEVPAQGSLPNANRK--NGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPP 438          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.820e-41
Identity = 95/215 (44.19%), Postives = 127/215 (59.07%), Query Frame = 1
Query:  757 LLWVHAIPRWGSLVTLDTDNFPIPEG*FKRKHTGEGR--PGTGS--MGTEDTAEMLWQAKIATGNYHDAMTDNMFMK*VKPRLATVFKVKFRDKTISIAFVNASYYHGYNAEVRMPKSNSKGYNVELLREYKCKRITV*REVTGSAGVESKRYISKVLATGAFPQVNSKCGRGVSSSEVALRTRAFFQLKYPRKLMEKVEKFINALEWQLICPLP 1389
            ++ VHAI + G L  L  + FPI EG FK K     +  PG     M  E TAE LWQAK+ATG+YH+AMTD MFM+ +K RL   F  +F++K + +   NASY+H ++ EV++P++NSK YNVELLR+Y C    V RE  G A      Y  +V A G+ P  N K   GVS  E+A  TR +F+  +P+KL EK E ++    W LI   P
Sbjct:  187 MIMVHAITKHGPLAELQ-EGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAA----EYNFEVPAQGSLPNANRK--NGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPP 394          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 7.240e-41
Identity = 95/223 (42.60%), Postives = 128/223 (57.40%), Query Frame = 1
Query:  733 RLRRASCGLLWVHAIPRWGSLVTLDTDNFPIPEG*FKRKHTGEGR--PGTGS--MGTEDTAEMLWQAKIATGNYHDAMTDNMFMK*VKPRLATVFKVKFRDKTISIAFVNASYYHGYNAEVRMPKSNSKGYNVELLREYKCKRITV*REVTGSAGVESKRYISKVLATGAFPQVNSKCGRGVSSSEVALRTRAFFQLKYPRKLMEKVEKFINALEWQLICPLP 1389
            R+      ++ VHAI + G L  L  +  PI EG FK K     +  PG     M  E TAE LWQAK+ATG+YH+AMTD MFM+ +K RL   F  +F++K + +   NASY+H ++ EV++P++NSK YNVELLR+Y C    V RE  G A      Y  +V A G+ P  N K   GVS  E+A  TR +F+  +P+KL EK E ++    W LI   P
Sbjct:  141 RITGKGLRMIMVHAITKHGPLAELQ-EGLPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAA----EYNFEVPAQGSLPNANRK--NGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPP 356          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.710e-39
Identity = 160/517 (30.95%), Postives = 227/517 (43.91%), Query Frame = 3
Query:  255 TLRVHEGKVFKVIRTHCWKNYTLLTLSVKRRAALSGKGDARKLLEDDQCTSLHSLISEKRNSGQRVFLYNVGEWIKENYN-KYVSNRVIGGFSYRIGLRRPRERIKIPPLNHDRKPRIRRFLIEISTSLSQEKKEEAVIVYMDERFL------------TDDDDILQNGIGRTSKKSFLRIIMGTCHSQVGIVGNTRYG*FSDSRRLVQA*AYG*RQAGDWVNGYGGYRRDA-------------LAG*DCHRELPRCHDRQHVHEMS-KTTPSNSF*GEI*GQDNKYCFC*RLVLP---RV*RGGADA*KQL*RVQC*AFA*IQVQEDHRL-------TRGNR*RRRREQEVHL*STSHGRVSSGKLKVR*GREQFRGSAENSSIFPAQISQKTHGESGE----VYKRARVAADLPPPPYMPSFQPMELF*QHDKQYVSFNFT----MGEVWEQGWKRWCGDFTWEGQ*GGWKPADFSKHVTHAIKEMNKWVVS-DPILKDQMGALEAIPKSYKND 1667
            T ++   KV + I  H W +  L  ++   R   + K D R+ L + Q   L   I+++  +G++VF   V EW+    N +  SNR  GG   R+G +R R RIK PPLN +R  RIRRFL+E+  +   E    AVIVYMDE F+            +D+D ++Q+GIGRT+ K  LR+IM    ++ G +         D   + +           W    G  +++              LA  D H  +    D   +  +  + +P+ +   E  G+        R++L         G DA  ++              + H +        +  R RR+  ++  +          G       RE     AE ++     I    H E  E     + R +  A +  PPYMPSFQP+ELF QH KQYVS NF     M EVW Q  K W GD  W GQ GGWK AD SK V HAI EMNKWV   D +L   +G+LE  P  Y  D
Sbjct:  131 TFKIGHDKVRR-INNHWWDHRQLYEITAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKG-LRMIMVHAITKWGPLAK-----LCDGLPIEEG----------WFKETGSGKKEMEDEETAEFLWQAKLAKGDYHAAMT---DSMFMEWLEHRLSPAYNAIPEFKGK--------RMILVLDNASYHHGFDAEVKVPETNT---------KKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYI-HLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEK-PDGYDTD 608          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.730e-39
Identity = 94/215 (43.72%), Postives = 125/215 (58.14%), Query Frame = 1
Query:  757 LLWVHAIPRWGSLVTLDTDNFPIPEG*FKRKHTGEGR--PGTGS--MGTEDTAEMLWQAKIATGNYHDAMTDNMFMK*VKPRLATVFKVKFRDKTISIAFVNASYYHGYNAEVRMPKSNSKGYNVELLREYKCKRITV*REVTGSAGVESKRYISKVLATGAFPQVNSKCGRGVSSSEVALRTRAFFQLKYPRKLMEKVEKFINALEWQLICPLP 1389
            ++ VHAI   G L  L  + FPI EG FK K     +  PG     M  E TAE LWQAK+ATG+YH+AMTD MFM+ +K RL   F  +F++K + +   NASY+H ++ EV++P++NSK YNVELLR+Y C    V RE  G A      Y  +V A G+ P  N     GVS  E+A  TR +F+  +P+KL EK E ++    W LI   P
Sbjct:  308 MIMVHAITEHGPLAELQ-EGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAA----EYNFEVPAQGSLPNANRN---GVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPP 514          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5KL68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL68_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 2.180e-39
Identity = 94/215 (43.72%), Postives = 125/215 (58.14%), Query Frame = 1
Query:  757 LLWVHAIPRWGSLVTLDTDNFPIPEG*FKRKHTGEGR--PGTGS--MGTEDTAEMLWQAKIATGNYHDAMTDNMFMK*VKPRLATVFKVKFRDKTISIAFVNASYYHGYNAEVRMPKSNSKGYNVELLREYKCKRITV*REVTGSAGVESKRYISKVLATGAFPQVNSKCGRGVSSSEVALRTRAFFQLKYPRKLMEKVEKFINALEWQLICPLP 1389
            ++ VHAI + G L  L    FPI EG FK K     +  PG     M  E TAE LWQAK+ATG Y++AMTD MFM+ +K RL   F  +F++K + +   NASY+H ++ EV++P++NSK YNVELLR+Y C    V RE  G A      Y  +V A G+ P  N K   GVS  E+A  TR +F+  +P+KL EK E ++    W LI   P
Sbjct:  182 MVMVHAITKHGPLAELQ-GGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGYYNNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAA----EYNFEVPAQGSLPNANRK--NGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPP 389          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: A0A6H5KF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF49_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 6.620e-38
Identity = 90/215 (41.86%), Postives = 126/215 (58.60%), Query Frame = 1
Query:  757 LLWVHAIPRWGSLVTLDTDNFPIPEG*FKRKHTGEGRPGTGSMGTED--TAEMLWQAKIATGNYHDAMTDNMFMK*VKPRLATVFKV--KFRDKTISIAFVNASYYHGYNAEVRMPKSNSKGYNVELLREYKCKRITV*REVTGSAGVESKRYISKVLATGAFPQVNSKCGRGVSSSEVALRTRAFFQLKYPRKLMEKVEKFINALEWQLICPLP 1389
            ++ VHAI +WG L  L  D FPI EG FK K  G+G+ G      ED  TAE LWQAK+A G+YH AMTD+MFM+ ++ RL+  +     F+ K + +   NASY+ G++AEV++P++N+K YNVELLR Y  + I V +    +  V  +R+          P    +   GVS  EVA  TR +F+L +P KL E+VE F+    W+LI   P
Sbjct:  314 MIMVHAITKWGPLAKL-CDGFPIEEGWFKSKGGGKGKRGGKDFNLEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLERRLSPAYNAVPDFKGKKMILVRDNASYHQGFDAEVKVPETNTKKYNVELLRRYGVRSIKV-KRAAANGRVVQQRFEVPTDEGSTLPDARRE--GGVSREEVATATREYFRLNHPEKLEERVETFMREKGWELIWTPP 524          
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.150e-37
Identity = 153/513 (29.82%), Postives = 230/513 (44.83%), Query Frame = 3
Query:  255 TLRVHEGKVFKVIRTHCWKNYTLLTLSVKRRAALSGKGDARKLLEDDQCTSLHSLISEKRNSGQRVFLYNVGEWIKENYN-KYVSNRVIGGFSYRIGLRRPRERIKIPPLNHDRKPRIRRFLIEISTSLSQEKKEEAVIVYMDERFL------------TDDDDILQNGIGRTSKKSFLRIIMGTCHSQVGIVGNTRYG*FSDSRRLVQA*AYG*RQAGDWVNGYGGYRRDALAG*DCHRELPRCHDRQHVHEMS-KTTPSNSF*GEI*GQ------DNK---YCFC*RLVLPR----------V*RGGADA*KQL*RVQC*AFA*----IQVQEDHRLTRGNR*RRRREQEVHL*STSHGRVSSGKLKVR*GREQFRGSAENSSIFPAQISQKTHGESGEVYKRARVAADLPPPPYMPSFQPMELF*QHDKQYVSFNFT----MGEVWEQGWKRWCGDFTWEGQ*GGWKPADFSKHVTHAIKEMNKWVVS-DPILKDQMGALEAIPKSYKND 1667
            T ++   KV + I  H W +  L   +   R  ++ + D R+ L + Q   L   I+++  +G++VF   V EW+    N +  SNR +GG   R+G +R R RIK PPLN +R  RIRRFL+E+  +   E    AVIVYMDE F+            +D++ ++Q+GIGRT+ K  LR+IM    ++ G +     G F       +    G ++  D       ++     G D H  +    D   +  +  + +P+ +   E  G+      DN    + F   + +P           + + GA + +   +     F      +  +       GNR                G VS  ++     RE  R        +P ++ ++        + + +  A +  PPYMPSFQP+ELF QH KQYVS NF     M EVW Q  + W GD  W GQ GGWK A+ SK V HAI EMNKWV   D  L  ++G L+  P  Y  D
Sbjct:  165 TFKIGHDKVRR-INNHWWDHRQLYETTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNMEQPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKG-LRMIMVHAITKWGPLAKFCDG-FPIEEGWFKETGSGKKKMEDEETAEFLWQAKLAKG-DYHAAMT---DSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNR---------------EGGVSRAEVATA-TREYIR------LNYPERLEERV-----VTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLSGKIGNLQK-PDGYDKD 642          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8560.16146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI3.460e-10643.67Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KZM0_9PHAE1.950e-4656.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP14_9PHAE2.350e-4144.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE2.820e-4144.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LE74_9PHAE7.240e-4142.60Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIM5_9PHAE1.710e-3930.95DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KDX2_9PHAE1.730e-3943.72Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL68_9PHAE2.180e-3943.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF49_9PHAE6.620e-3841.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI3.150e-3729.82DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8560contigH-elongata_contig8560:3280..5263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1790
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8560.16146.1prot_H-elongata_contig8560.16146.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8560 3280..3486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931259.1734304-CDS-H-elongata_contig8560:3279..34861622931259.1734304-CDS-H-elongata_contig8560:3279..3486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8560 3280..3486 -
1691679763.1872115-CDS-H-elongata_contig8560:3279..34861691679763.1872115-CDS-H-elongata_contig8560:3279..3486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8560 3280..3486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931259.1990874-UTR-H-elongata_contig8560:3486..47781622931259.1990874-UTR-H-elongata_contig8560:3486..4778Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8560 3487..4778 -
1691679763.1968584-UTR-H-elongata_contig8560:3486..47781691679763.1968584-UTR-H-elongata_contig8560:3486..4778Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8560 3487..4778 -
1622931259.217327-UTR-H-elongata_contig8560:4972..52631622931259.217327-UTR-H-elongata_contig8560:4972..5263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8560 4973..5263 -
1691679763.207044-UTR-H-elongata_contig8560:4972..52631691679763.207044-UTR-H-elongata_contig8560:4972..5263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8560 4973..5263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8560.16146.1

>prot_H-elongata_contig8560.16146.1 ID=prot_H-elongata_contig8560.16146.1|Name=mRNA_H-elongata_contig8560.16146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MNKWVVSDPILKDQMGALEAIPKSYKNDAPGHNEMRNDDCLEAQEKLELS
AEMMEFVGDEDVDGDVEV*
back to top

mRNA from alignment at H-elongata_contig8560:3280..5263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8560.16146.1 ID=mRNA_H-elongata_contig8560.16146.1|Name=mRNA_H-elongata_contig8560.16146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1984bp|location=Sequence derived from alignment at H-elongata_contig8560:3280..5263- (Himanthalia elongata Himel1 dioecious)
GTCGCCGCCCGTGAAGCCGTGATATTAGAGGAAGTTAAGGGAACGCAAGA AAAGCAGGAGCAAAAAGCCGATGCGCACACTCGCACACCTCAGCAAGTGA CTCGAGAGGCAGAAGATGCTGTCAAGCAACATCAAGAGTTGGCTAACAGG ATAGGCTTACTTCTGGACATACCATAGTCTCGCGGGATACTCCTAACGTA CTTTGATCTGACTCAGTCAGGCATAGACCCGAACTTGCTCACTAAACCGT TTCGACGCTTCGCGTGCACGAGGGCAAGGTGTTCAAGGTAAGTCATTCAC TACTGAACACTTGTAGCCTTGTACATACTATTACTGAAATTACTGTAGTT ACTACTGTACTGCTGTAAGACTGGTAACTGCTGTATAGCAATCTGGTCTG TATTTTGAGCATGTTTATGTATCTGTATACGGCTGCTGTAATATTCTCAC GGTATTTTGTGCATCGACCTCGTATTAAAAACAAGTCCGTACTCATTGCT GGAAGAATTACACGTTGCTGACATTATCGGTGAAGAGGAGAGCTGCGTTG AGCGGGAAGGGTGACGCGCGAAAGCTTCTTGAAGATGACCAGTGCACCAG CCTTCATTCTCTTATCAGCGAGAAACGCAACAGCGGACAAAGAGTGTTCC TATACAATGTGGGGGAATGGATCAAGGAGAACTACAACAAGTACGTTTCT AACCGAGTGATAGGAGGGTTTTCGTACAGGATTGGTCTTAGACGCCCTAG AGAAAGGATAAAAATCCCGCCTCTCAATCACGATAGGAAGCCGCGCATCC GTCGCTTTCTTATCGAAATCTCTACTTCTCTCTCTCAAGAAAAAAAAGAG GAGGCGGTCATTGTGTACATGGATGAGAGATTTCTCACCGATGATGATGA TATATTGCAAAATGGAATAGGCCGTACGTCTAAGAAGAGCTTCTTGCGGA TTATTATGGGTACATGCCATTCCCAGGTGGGGATCGTTGGTAACACTAGA TACGGATAATTTTCCGATTCCCGAAGGCTAGTTCAAGCGTAAGCATACGG GTGAAGGCAGGCCGGGGACTGGGTCAATGGGTACGGAGGATACCGCAGAG ATGCTTTGGCAGGCTAAGATTGCCACAGGGAATTACCACGATGCCATGAC AGACAACATGTTCATGAAATGAGTAAAACCACGCCTAGCAACAGTTTTTA AGGTGAAATTTAGGGACAAGACAATAAGTATTGCTTTTGTTAACGCCTCG TACTACCACGGGTATAACGCGGAGGTGCGGATGCCTAAAAGCAACTCTAA AGGGTACAATGTTGAGCTTTTGCGTGAATACAAGTGCAAGAGGATCACCG TTTAACGAGAGGTAACCGGTAGCGCAGGCGTAGAGAGCAAGAGGTACATC TCTAAAGTACTAGCCACGGGCGCGTTTCCTCAGGTAAACTCAAAGTGCGG TAGGGGCGTGAGCAGTTCCGAGGTAGCGCTGAGAACTCGAGCATTTTTCC AGCTCAAATATCCCAGAAAACTCATGGAGAAAGTGGAGAAGTTTATAAAC GCGCTCGAGTGGCAGCTGATTTGCCCCCTCCCCCGTACATGCCGAGTTTT CAGCCGATGGAACTGTTCTGACAGCACGATAAGCAGTATGTGAGCTTTAA CTTTACTATGGGAGAGGTTTGGGAGCAAGGTTGGAAACGGTGGTGTGGAG ATTTCACATGGGAAGGGCAATAAGGGGGATGGAAACCAGCGGACTTTAGC AAACATGTCACGCACGCCATTAAGGAGATGAACAAATGGGTCGTGAGTGA CCCTATTCTCAAGGATCAGATGGGCGCTCTTGAAGCGATTCCCAAGTCCT ACAAAAATGATGCCCCTGGGCACAACGAGATGAGAAACGATGATTGCCTA GAGGCCCAAGAGAAGCTTGAGTTGTCAGCGGAAATGATGGAGTTCGTTGG CGACGAGGACGTGGACGGTGATGTAGAGGTGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8560:3280..5263-

>mRNA_H-elongata_contig8560.16146.1 ID=mRNA_H-elongata_contig8560.16146.1|Name=mRNA_H-elongata_contig8560.16146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig8560:3280..5263- (Himanthalia elongata Himel1 dioecious)
ATGAACAAATGGGTCGTGAGTGACCCTATTCTCAAGGATCAGATGGGCGC
TCTTGAAGCGATTCCCAAGTCCTACAAAAATGATGCCCCTGGGCACAACG
AGATGAGAAACGATGATTGCCTAGAGGCCCAAGAGAAGCTTGAGTTGTCA
GCGGAAATGATGGAGTTCGTTGGCGACGAGGACGTGGACGGTGATGTAGA
GGTGTAGATGAACAAATGGGTCGTGAGTGACCCTATTCTCAAGGATCAGA
TGGGCGCTCTTGAAGCGATTCCCAAGTCCTACAAAAATGATGCCCCTGGG
CACAACGAGATGAGAAACGATGATTGCCTAGAGGCCCAAGAGAAGCTTGA
GTTGTCAGCGGAAATGATGGAGTTCGTTGGCGACGAGGACGTGGACGGTG
ATGTAGAGGTGTAG
back to top