mRNA_H-elongata_contig85513.16135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85513.16135.1
Unique NamemRNA_H-elongata_contig85513.16135.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: D8LMZ4_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ4_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.490e-32
Identity = 121/159 (76.10%), Postives = 132/159 (83.02%), Query Frame = 1 
Query:  187 MLIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVHVDGNVGL---DRRYLDELLQTRPELRIVGG 654
            M+IARSLKDAA+ G ATTSLLLR S+DL+C+NLMCAK+G ACVCRLAVHLSRL  L ELD+AENDL VLPE VF+LP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EVHVDGN GL   DR  + E LQ RP+  +V G
Sbjct:    1 MVIARSLKDAARLGSATTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLGSSDR--VVEALQHRPQTTVVFG 157
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: A0A1V9ZV51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV51_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.940e-17
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:  190 LIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPELE 426
            +IA+SL+DAA    +   L+LR S DL+CRNLMC ++G ACVC+L++ L RL  L ELD++EN L++LP S+F L +L+
Sbjct:    1 MIAKSLRDAATHTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQLSKLK 79
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: A0A836CFY3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.430e-16
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  190 LIARSLKDAAKFG--GATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFD 411
            L+A SL +A+     G   SL+LR+S+DL+CRN+MC KLGGAC+CRLAV L R  GL  LD+A+N L  LPE+V +
Sbjct:    9 LVAASLAEASSMAPQGGPVSLVLRSSEDLLCRNIMCEKLGGACLCRLAVCLGRCSGLQSLDLAKNGLATLPEAVLE 84
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: A0A485L6B7_9STRA (Aste57867_16664 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6B7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.650e-15
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:  190 LIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPELE 426
            +I RS++DAA   GA   LLLR S+DL+CRNLMC ++G AC+CR ++ L +L  L +LD++ N+L  LP ++F LP LE
Sbjct:  332 MIVRSVRDAAMHMGAVKELLLRRSEDLLCRNLMCERVGEACICRFSLVLEKLPQLTKLDVSHNNLHALPPALFQLPRLE 410
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: A0A024GQG6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQG6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.790e-15
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  193 IARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPEL 423
            +A S + AAK G AT  L+L  S DL+C+NLMC ++GGAC CRLA  L+ +  L  LD++ N+L  +P++VF L +L
Sbjct:    5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSLQDL 81
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: T0QH27_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH27_SAPDV)

HSP 1 Score: 80.5 bits (197), Expect = 4.710e-15
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:  190 LIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPEL 423
            +IA+SL+DAA    A   L+LR S+DL+C NLMC ++G ACVC+L+V L RL  L  LD++ N+L+ LP ++F L  L
Sbjct:    1 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSLRHL 78
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: F0WI42_9STRA (Uncharacterized protein AlNc14C107G6249 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WI42_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-14
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  193 IARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPELE 426
            +A S +D AK G     L+L+ S DL+C+NLMC K+GGAC CRLA  L+ +  L  LD++ N L  +PE+VF L +L+
Sbjct:    5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGLQDLK 82
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: A0A6G0X207_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X207_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.730e-14
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:  190 LIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPELE 426
            +I RS+++AA   GA   L+LR S+DL+CRNLMC ++G AC+CRL++ L +L  L  LD++ N L  LP SVF L  LE
Sbjct:  291 MIVRSVREAAMHMGAVRELILRQSEDLLCRNLMCERVGDACMCRLSIVLEKLPNLTTLDVSANRLPALPPSVFQLGRLE 369
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: A0A067CF62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CF62_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 4.980e-13
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  190 LIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFDLPEL 423
            +IA+SL+DAA    A   L+LR S+DL+C NLMC ++G ACVC+L+V L RL  L  LD++ N+L  LP ++F L  L
Sbjct:  382 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLMSLPPAIFSLRHL 459
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BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Match: A0A397AM31_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AM31_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.100e-13
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  190 LIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHLSRLRGLHELDIAENDLRVLPESVFD 411
            +IARS+++AA   GA   L+L+ S+DL+CRNLMC ++G ACVCR ++ L +L  L  L+++ N L  LP S+F+
Sbjct:    1 MIARSVREAAMHMGAVRELILQRSEDLLCRNLMCERVGEACVCRFSMVLEKLPQLKALNVSHNHLHALPPSLFN 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85513.16135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LMZ4_ECTSI4.490e-3276.10Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A1V9ZV51_9STRA2.940e-1751.90Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A836CFY3_9STRA3.430e-1655.26Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A485L6B7_9STRA3.650e-1550.63Aste57867_16664 protein n=1 Tax=Aphanomyces stella... [more]
A0A024GQG6_9STRA3.790e-1548.05Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
T0QH27_SAPDV4.710e-1550.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
F0WI42_9STRA1.080e-1447.44Uncharacterized protein AlNc14C107G6249 n=1 Tax=Al... [more]
A0A6G0X207_9STRA6.730e-1450.63Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CF62_SAPPC4.980e-1350.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A397AM31_9STRA9.100e-1347.30Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85513contigH-elongata_contig85513:896..2188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue7.4e-27
Seed eggNOG ortholog2880.D8LMZ4
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_001180.1
Exons2
Model size839
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85513.16135.1prot_H-elongata_contig85513.16135.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85513 1082..2015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.0253742-UTR-H-elongata_contig85513:895..10811622931258.0253742-UTR-H-elongata_contig85513:895..1081Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85513 896..1081 +
1691679762.7460227-UTR-H-elongata_contig85513:895..10811691679762.7460227-UTR-H-elongata_contig85513:895..1081Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85513 896..1081 +
1622931258.0963216-UTR-H-elongata_contig85513:2015..21881622931258.0963216-UTR-H-elongata_contig85513:2015..2188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85513 2016..2188 +
1691679762.7789483-UTR-H-elongata_contig85513:2015..21881691679762.7789483-UTR-H-elongata_contig85513:2015..2188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85513 2016..2188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.054879-CDS-H-elongata_contig85513:1081..13371622931258.054879-CDS-H-elongata_contig85513:1081..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85513 1082..1337 +
1691679762.7598329-CDS-H-elongata_contig85513:1081..13371691679762.7598329-CDS-H-elongata_contig85513:1081..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85513 1082..1337 +
1622931258.0788312-CDS-H-elongata_contig85513:1791..20151622931258.0788312-CDS-H-elongata_contig85513:1791..2015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85513 1792..2015 +
1691679762.7695582-CDS-H-elongata_contig85513:1791..20151691679762.7695582-CDS-H-elongata_contig85513:1791..2015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85513 1792..2015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85513.16135.1

>prot_H-elongata_contig85513.16135.1 ID=prot_H-elongata_contig85513.16135.1|Name=mRNA_H-elongata_contig85513.16135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MLIARSLKDAAKFGGATTSLLLRASDDLICRNLMCAKLGGACVCRLAVHL
SRLRGLHELDIAENDLRVLPESVFDLPELEHLDISGNGLTALPATVASLA
SLRTLRLSNNSLMGLPRELGSLPCLKEVHVDGNVGLDRRYLDELLQTRPE
LRIVGGKDA*
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mRNA from alignment at H-elongata_contig85513:896..2188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85513.16135.1 ID=mRNA_H-elongata_contig85513.16135.1|Name=mRNA_H-elongata_contig85513.16135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1293bp|location=Sequence derived from alignment at H-elongata_contig85513:896..2188+ (Himanthalia elongata Himel1 dioecious)
AAGAAAATACCGTGGCTTGAGACACGAGGTCCTCATTAGCGATCGTCGTT
AGGTGGCACGTTGTGAAACTAAGAGTGAACCGCTAATCGAATCAGATTTG
AAGGCTCCCACCAAAATCCTCTATCGAGTGCGGTGTTTCTCACTCGGGGG
TCGCTGTGTTATCTACTATACCATATACCATCTAAGATGTTGATCGCCCG
AAGTCTCAAAGACGCTGCCAAATTCGGCGGCGCAACCACATCTCTGCTCC
TCCGAGCCAGCGATGACCTGATTTGCCGAAATCTGATGTGTGCCAAGCTC
GGGGGTGCGTGCGTCTGTCGACTGGCGGTCCATCTGTCGAGACTAAGAGG
TCTTCACGAACTCGATATTGCCGAGAATGACCTAAGGGTGTTGCCAGAGA
GCGTGTTCGATCTGCCTGAGCTGGAGCATCTCGATATCAGCGGTGGGCGT
GAAGCTTTGTCTTTCCCCAGATTTCTGCGTTTATGCTGCTAGCACATTTC
CCGCCTTGTTTACTCTCATGTAGTTCGTCAAACCCAGGCTTGTCTATGTT
CGGGGCAGATGTAGGGCGGCAGCAAAGTACATCTGAATCTCTTTCATAGT
ACTGTACATGGTACTAAAGGTTTGTAACTCCTATCCAACAGTGGATTCTA
AAGGGCGAGGTGTGAGTACTGTGTACTTCTGATGCGGGGATAGTCAACTC
ATAGATGCTCGTAAGCCAGCTGCCGCTGACAGTGGCATGTATCTGCGGCT
TGGCGGCTTGTTTCACCTGCACCGTTTGAACAACAACAATGCGCTTCCTT
TTTTATGCCATAGACTATATACTTTATACACTTCTGTATCTATACTATTA
TTCATTTCATCACCCCACGTACTACGCTTTCATTTTATCTGTGCAGGCAA
CGGCTTGACAGCCCTCCCTGCGACGGTGGCCTCCCTTGCAAGTCTGCGCA
CGTTGCGACTTTCCAACAACAGCCTCATGGGCCTACCCCGAGAGCTGGGA
TCGCTCCCGTGTTTGAAAGAGGTGCACGTGGACGGCAACGTTGGGCTGGA
TCGAAGATACCTGGATGAACTACTTCAGACACGGCCGGAGCTGCGGATCG
TGGGGGGAAAAGACGCGTGACATGTACAGGAGCTTACCCGTACCGATACT
ACATTTCATCCACGCCCCTGTAGCAACGAGATCGCGGCGTGGTTGGGAGA
GAACGAACGAACTATGCAAAAAAAATGGATCGCTTCTCTCTGTTTCTCTG
CCGATGCAGGAAGCGAATCGCGTGCACTTGGTCGCTCCGATGG
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Coding sequence (CDS) from alignment at H-elongata_contig85513:896..2188+

>mRNA_H-elongata_contig85513.16135.1 ID=mRNA_H-elongata_contig85513.16135.1|Name=mRNA_H-elongata_contig85513.16135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig85513:896..2188+ (Himanthalia elongata Himel1 dioecious)
ATGTTGATCGCCCGAAGTCTCAAAGACGCTGCCAAATTCGGCGGCGCAAC
CACATCTCTGCTCCTCCGAGCCAGCGATGACCTGATTTGCCGAAATCTGA
TGTGTGCCAAGCTCGGGGGTGCGTGCGTCTGTCGACTGGCGGTCCATCTG
TCGAGACTAAGAGGTCTTCACGAACTCGATATTGCCGAGAATGACCTAAG
GGTGTTGCCAGAGAGCGTGTTCGATCTGCCTGAGCTGGAGCATCTCGATA
TCAGCGATGTTGATCGCCCGAAGTCTCAAAGACGCTGCCAAATTCGGCGG
CGCAACCACATCTCTGCTCCTCCGAGCCAGCGATGACCTGATTTGCCGAA
ATCTGATGTGTGCCAAGCTCGGGGGTGCGTGCGTCTGTCGACTGGCGGTC
CATCTGTCGAGACTAAGAGGTCTTCACGAACTCGATATTGCCGAGAATGA
CCTAAGGGTGTTGCCAGAGAGCGTGTTCGATCTGCCTGAGCTGGAGCATC
TCGATATCAGCGGCAACGGCTTGACAGCCCTCCCTGCGACGGTGGCCTCC
CTTGCAAGTCTGCGCACGTTGCGACTTTCCAACAACAGCCTCATGGGCCT
ACCCCGAGAGCTGGGATCGCTCCCGTGTTTGAAAGAGGTGCACGTGGACG
GCAACGTTGGGCTGGATCGAAGATACCTGGATGAACTACTTCAGACACGG
CCGGAGCTGCGGATCGTGGGGGGAAAAGACGCGTGAGCAACGGCTTGACA
GCCCTCCCTGCGACGGTGGCCTCCCTTGCAAGTCTGCGCACGTTGCGACT
TTCCAACAACAGCCTCATGGGCCTACCCCGAGAGCTGGGATCGCTCCCGT
GTTTGAAAGAGGTGCACGTGGACGGCAACGTTGGGCTGGATCGAAGATAC
CTGGATGAACTACTTCAGACACGGCCGGAGCTGCGGATCGTGGGGGGAAA
AGACGCGTGA
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