mRNA_H-elongata_contig85285.16122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85285.16122.1
Unique NamemRNA_H-elongata_contig85285.16122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: D7FYC0_ECTSI (GTPBP2, EF1alpha-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC0_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.960e-21
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+GVLGH GAGKSTLV VL +G+SDNGRGLARMQVFRHNHEVFNGQTSSISQQ
Sbjct:  340 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 392
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: A0A6H5KZE4_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.960e-21
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+GVLGH GAGKSTLV VL +G+SDNGRGLARMQVFRHNHEVFNGQTSSISQQ
Sbjct:  431 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 483
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: A0A835YVP3_9STRA (GTP binding protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.660e-16
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G  GAGKSTLVGVL RG +DNGRGLARMQVFRHNHEV +G+TSSIS Q
Sbjct:  123 RVAVVGQEGAGKSTLVGVLTRGKNDNGRGLARMQVFRHNHEVSDGRTSSISHQ 175
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: W7TQD6_9STRA (Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQD6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.120e-13
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQ 156
            R+ VLG    GKSTLVGVL  G  DNG+GLARMQVFRHNHEV NG+TSS+SQ
Sbjct:  222 RVAVLGGEEGGKSTLVGVLTTGKLDNGQGLARMQVFRHNHEVENGRTSSVSQ 273
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: A0A6A5AA89_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA89_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.980e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G   +GKSTL+GVL RG  D+G GLARMQVFRH HE+ NG+TSSIS+Q
Sbjct:   93 RVSVIGDVDSGKSTLIGVLTRGCLDDGNGLARMQVFRHLHEIENGRTSSISEQ 145
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: UPI0006451DAC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451DAC)

HSP 1 Score: 69.7 bits (169), Expect = 1.380e-12
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            RI V+G+  AGKSTL+GVL RG  DNGRGLARM +FRH HE+ +G+TSSISQ+
Sbjct:  220 RITVVGNVDAGKSTLLGVLTRGQLDNGRGLARMNIFRHKHEIESGRTSSISQE 272
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: A0A485LBK4_9STRA (Aste57867_18893 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBK4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-12
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G   +GKSTL+GVL RG  D+G GLARMQVFRH HEV NG+TSSIS+Q
Sbjct:  116 RVSVIGDVDSGKSTLIGVLTRGCLDDGNGLARMQVFRHLHEVENGRTSSISEQ 168
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: A0A7R9UBW3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBW3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-12
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSIS 153
            R+GV+G  G+GKSTL+GVL+ G  DN RGLARM+V RHNHEV +G+TSSIS
Sbjct:  172 RMGVVGEEGSGKSTLIGVLSSGTLDNARGLARMKVLRHNHEVESGRTSSIS 222
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: A0A0G4HQX4_9ALVE (Tr-type G domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HQX4_9ALVE)

HSP 1 Score: 69.3 bits (168), Expect = 1.890e-12
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSIS 153
            RI VLG   AGKSTLVGVL   L DNGRGLARM+V RH HEV NG+TSS+S
Sbjct:  243 RIAVLGDHDAGKSTLVGVLTSDLLDNGRGLARMRVLRHRHEVLNGKTSSVS 293
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BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Match: W4G9Q7_9STRA (Tr-type G domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9Q7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.540e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G   +GKSTL+GVL RG  D+G GLARMQVFRH HE+ NG+TSSIS+Q
Sbjct:  127 RVSVIGDVDSGKSTLIGVLTRGCLDDGNGLARMQVFRHLHEIENGRTSSISEQ 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85285.16122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYC0_ECTSI2.960e-2188.68GTPBP2, EF1alpha-like GTPase n=1 Tax=Ectocarpus si... [more]
A0A6H5KZE4_9PHAE2.960e-2188.68Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YVP3_9STRA1.660e-1677.36GTP binding protein 2 n=1 Tax=Tribonema minus TaxI... [more]
W7TQD6_9STRA2.120e-1373.08Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxI... [more]
A0A6A5AA89_9STRA3.980e-1366.04Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
UPI0006451DAC1.380e-1267.92hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A485LBK4_9STRA1.880e-1267.92Aste57867_18893 protein n=1 Tax=Aphanomyces stella... [more]
A0A7R9UBW3_9STRA1.880e-1268.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4HQX4_9ALVE1.890e-1272.55Tr-type G domain-containing protein n=1 Tax=Chrome... [more]
W4G9Q7_9STRA2.540e-1266.04Tr-type G domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85285contigH-elongata_contig85285:400..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1e-17
Seed eggNOG ortholog2880.D7FYC0
EggNOG free text desc.GTP metabolic process
EggNOG OGsCOG5258@1,KOG0463@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931256.732146-CDS-H-elongata_contig85285:399..5581622931256.732146-CDS-H-elongata_contig85285:399..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85285 400..558 -
1691679762.2381694-CDS-H-elongata_contig85285:399..5581691679762.2381694-CDS-H-elongata_contig85285:399..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85285 400..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85285.16122.1prot_H-elongata_contig85285.16122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85285 400..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85285.16122.1

>prot_H-elongata_contig85285.16122.1 ID=prot_H-elongata_contig85285.16122.1|Name=mRNA_H-elongata_contig85285.16122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
RIGVLGHGGAGKSTLVGVLARGLSDNGRGLARMQVFRHNHEVFNGQTSSI
SQQ
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mRNA from alignment at H-elongata_contig85285:400..558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85285.16122.1 ID=mRNA_H-elongata_contig85285.16122.1|Name=mRNA_H-elongata_contig85285.16122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig85285:400..558- (Himanthalia elongata Himel1 dioecious)
AGAATCGGCGTTCTAGGCCACGGCGGCGCGGGCAAGAGCACCCTGGTGGG
CGTTCTCGCGCGAGGCCTCAGCGACAACGGACGGGGCCTGGCGAGGATGC
AGGTGTTCCGCCACAACCATGAAGTTTTCAACGGTCAGACCAGCAGCATC
TCTCAGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig85285:400..558-

>mRNA_H-elongata_contig85285.16122.1 ID=mRNA_H-elongata_contig85285.16122.1|Name=mRNA_H-elongata_contig85285.16122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig85285:400..558- (Himanthalia elongata Himel1 dioecious)
AGAATCGGCGTTCTAGGCCACGGCGGCGCGGGCAAGAGCACCCTGGTGGG
CGTTCTCGCGCGAGGCCTCAGCGACAACGGACGGGGCCTGGCGAGGATGC
AGGTGTTCCGCCACAACCATGAAGTTTTCAACGGTCAGACCAGCAGCATC
TCTCAGCAAAGAATCGGCGTTCTAGGCCACGGCGGCGCGGGCAAGAGCAC
CCTGGTGGGCGTTCTCGCGCGAGGCCTCAGCGACAACGGACGGGGCCTGG
CGAGGATGCAGGTGTTCCGCCACAACCATGAAGTTTTCAACGGTCAGACC
AGCAGCATCTCTCAGCAA
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