mRNA_H-elongata_contig8518.16107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8518.16107.1
Unique NamemRNA_H-elongata_contig8518.16107.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8518.16107.1 vs. uniprot
Match: A0A6H5L5P1_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.850e-13
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 TQIGFGGIMIGGQMGEEQTHEVLDHAFDKADINWIDTSESYP 126
            ++IG+GG+M+GGQM EEQTHE L+HAFD A +NW+DTSES+P
Sbjct:  145 SRIGYGGMMVGGQMSEEQTHETLNHAFDVAGMNWLDTSESFP 186
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BLAST of mRNA_H-elongata_contig8518.16107.1 vs. uniprot
Match: D8LL89_ECTSI (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL89_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.160e-13
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    4 QIGFGGIMIGGQMGEEQTHEVLDHAFDKADINWIDTSESYP 126
            +IG+GG+M+GGQM EEQTHE L+HAFD A +NW+DTSES+P
Sbjct:    4 RIGYGGMMVGGQMSEEQTHETLNHAFDVAGMNWLDTSESFP 44
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BLAST of mRNA_H-elongata_contig8518.16107.1 vs. uniprot
Match: A0A2T7INH2_THEOR (Aldo-keto reductase n=1 Tax=Theileria orientalis TaxID=68886 RepID=A0A2T7INH2_THEOR)

HSP 1 Score: 50.1 bits (118), Expect = 7.420e-6
Identity = 19/42 (45.24%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 TQIGFGGIMIGGQMGEEQTHEVLDHAFDKADINWIDTSESYP 126
            +Q+G G +M G  + EE++H++LD+A+DK  +N+ DT E YP
Sbjct:  186 SQVGLGTMMFGSTLSEEESHKLLDYAYDKFGVNFFDTCELYP 227
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BLAST of mRNA_H-elongata_contig8518.16107.1 vs. uniprot
Match: A0A2T7ID67_THEOR (Uncharacterized protein n=1 Tax=Theileria orientalis TaxID=68886 RepID=A0A2T7ID67_THEOR)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 TQIGFGGIMIGGQMGEEQTHEVLDHAFDKADINWIDTSESYP 126
            +Q+G G ++ G  + EE++H++LD+A+DK  +N+ DT E YP
Sbjct: 2005 SQVGLGTMIFGSTLTEEESHKLLDYAYDKFGVNFFDTCELYP 2046
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8518.16107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L5P1_9PHAE1.850e-1369.05Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
D8LL89_ECTSI3.160e-1370.73Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
A0A2T7INH2_THEOR7.420e-645.24Aldo-keto reductase n=1 Tax=Theileria orientalis T... [more]
A0A2T7ID67_THEOR4.900e-542.86Uncharacterized protein n=1 Tax=Theileria oriental... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8518contigH-elongata_contig8518:250..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog2880.D8LL89
KEGG koko:K07005
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size105
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.1198459-CDS-H-elongata_contig8518:249..3541622931255.1198459-CDS-H-elongata_contig8518:249..354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8518 250..354 -
1691679761.6056406-CDS-H-elongata_contig8518:249..3541691679761.6056406-CDS-H-elongata_contig8518:249..354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8518 250..354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.134581-UTR-H-elongata_contig8518:354..3781622931255.134581-UTR-H-elongata_contig8518:354..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8518 355..378 -
1691679761.6194694-UTR-H-elongata_contig8518:354..3781691679761.6194694-UTR-H-elongata_contig8518:354..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8518 355..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8518.16107.1prot_H-elongata_contig8518.16107.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8518 250..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8518.16107.1

>prot_H-elongata_contig8518.16107.1 ID=prot_H-elongata_contig8518.16107.1|Name=mRNA_H-elongata_contig8518.16107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
MIGGQMGEEQTHEVLDHAFDKADINWIDTSESYP*
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mRNA from alignment at H-elongata_contig8518:250..378-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8518.16107.1 ID=mRNA_H-elongata_contig8518.16107.1|Name=mRNA_H-elongata_contig8518.16107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig8518:250..378- (Himanthalia elongata Himel1 dioecious)
ACACAGATTGGGTTCGGTGGGATCATGATCGGAGGCCAGATGGGAGAGGA
ACAAACCCATGAGGTTTTGGATCACGCGTTCGACAAAGCGGACATAAATT
GGATCGATACGTCGGAGAGCTACCCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig8518:250..378-

>mRNA_H-elongata_contig8518.16107.1 ID=mRNA_H-elongata_contig8518.16107.1|Name=mRNA_H-elongata_contig8518.16107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig8518:250..378- (Himanthalia elongata Himel1 dioecious)
ATGATCGGAGGCCAGATGGGAGAGGAACAAACCCATGAGGTTTTGGATCA
CGCGTTCGACAAAGCGGACATAAATTGGATCGATACGTCGGAGAGCTACC
CGTAAATGATCGGAGGCCAGATGGGAGAGGAACAAACCCATGAGGTTTTG
GATCACGCGTTCGACAAAGCGGACATAAATTGGATCGATACGTCGGAGAG
CTACCCGTAA
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