mRNA_H-elongata_contig85008.16099.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85008.16099.1
Unique NamemRNA_H-elongata_contig85008.16099.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 192 bits (488), Expect = 9.130e-54
Identity = 90/158 (56.96%), Postives = 119/158 (75.32%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            HTSANLSA+  K RPIA GD+ RR++G V CR+YG  LA++F+P  QYGVAV  G E+++  A L  ++G  +L+YD  NAFNSM R   LP LA+++P ++PYA N+YARE PKLL+  D G + V+ SA GVQQ CNLGPLCYSAG+LK+L++FR+
Sbjct: 1219 HTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRA 1375          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.200e-44
Identity = 82/158 (51.90%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            HTSANLSAL +K RPIA G VLRR+I   FCR+Y   +A+ F+  +Q+G  V  GVEI++ TA L  ++G +ILS+D  NA+NSM R   LP +A   P LV Y  N+YAR   KLLF ++ G +EVV S RGVQQ CNLG   +  G+L I+KEF +
Sbjct:  183 HTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 3.130e-43
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            HTSANLSAL +K RPIA G VLRR+I   FCR+Y   +A+ F+  +Q+G  V  GVEI++ TA L  ++G +ILS+D  NA+NSM R   LP +A   P L  Y  N+YAR   KLLF ++ G +EVV S RGVQQ CNLG   +  G+L I+KEF +
Sbjct:   31 HTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 188          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.480e-42
Identity = 82/158 (51.90%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            HTSANLSAL +K RPIA G VLRR+I   FCR+Y   +A+ F+  +Q+G  V  GVEI++ TA L  ++G +ILS+D  NA+NSM R   LP +A   P LV Y  N+YAR   KLLF ++ G +EVV S RGVQQ CNLG   +  G+L I+KEF +
Sbjct:  183 HTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.760e-42
Identity = 82/158 (51.90%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            HTSANLSAL +K RPIA G VLRR+I   FCR+Y   +A+ F+  +Q+G  V  GVEI++ TA L  ++G +ILS+D  NA+NSM R   LP +A   P LV Y  N+YAR   KLLF ++ G +EVV S RGVQQ CNLG   +  G+L I+KEF +
Sbjct:  183 HTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.060e-42
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            HTSANLSAL +K RPIA G VLRR+I   FC +Y   +A+ F+  +Q+G  V  GVEI++ TA L  ++G +ILS+D  NA+NSM R   LP +A   P LV Y  N+YAR   KLLF ++ G +EVV S RGVQQ CNLG   +  G+L I+KEF +
Sbjct:  183 HTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.140e-41
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            HTSANLSAL +K RPIA G VLRR+I   F R+Y   +A+ F+  +Q+G  V  GVEI++ TA L  ++G +ILS+D  NA+NSM R   LP +A + P LV Y  N+YAR   KLLF ++ G +EVV S RGVQQ CNLG   +  G+L I+KEF +
Sbjct:   31 HTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 188          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.500e-35
Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    4 TSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQ 408
            TSA+LSAL +K RPIA G VLRR+I   FCR+Y + +AD F+  +Q+G  V  GVEI++ TA L  ++G +ILS+D  NA+NS+ R   L  +A   P LV Y  NLYAR   KLLF ++ G +E+V S R VQQ
Sbjct:   32 TSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.550e-17
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 HTSANLSALEQKARPIACGDVLRRVI------------GAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLA 285
            HTSA+LSAL +K RPIA G VLRR+I               FCR+Y + +AD F+  +Q+G  V  GVEI++ TA    ++G +ILS+D  NA+NS+ R   L  +A
Sbjct:   31 HTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137          
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.260e-15
Identity = 51/155 (32.90%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   10 ANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGVAVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPSLVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVLKILKEFRS 474
            ++L AL +K RP+  G   RR+I A   R +  KL + F+  DQ+GVAV+ GVE +++ A L  + G  ++  D +N  N+  R   +   A+ VP LV   A  Y   + K ++A+D G    +E   GVQQ   +GP  +   ++ I+ + R+
Sbjct:  115 SSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCYELPA-KAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRA 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85008.16099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN9.130e-5456.96Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KQ62_9PHAE1.200e-4451.90Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE3.130e-4351.27Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCM0_9PHAE1.480e-4251.90Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE1.760e-4251.90Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGJ4_9PHAE2.060e-4251.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE1.140e-4151.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3H3_9PHAE6.500e-3550.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE6_9PHAE4.550e-1743.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KT19_9PHAE5.260e-1532.90Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85008contigH-elongata_contig85008:2160..2633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog400682.PAC_15702057
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.891076-CDS-H-elongata_contig85008:2159..26331622931253.891076-CDS-H-elongata_contig85008:2159..2633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85008 2160..2633 -
1691679761.277468-CDS-H-elongata_contig85008:2159..26331691679761.277468-CDS-H-elongata_contig85008:2159..2633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85008 2160..2633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85008.16099.1prot_H-elongata_contig85008.16099.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85008 2160..2633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85008.16099.1

>prot_H-elongata_contig85008.16099.1 ID=prot_H-elongata_contig85008.16099.1|Name=mRNA_H-elongata_contig85008.16099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
HTSANLSALEQKARPIACGDVLRRVIGAVFCRRYGRKLADYFQPWDQYGV
AVSSGVEIMSLTATLGFEEGCSILSYDEANAFNSMHRHIFLPVLAEIVPS
LVPYAANLYARESPKLLFALDGGGVEVVESARGVQQCCNLGPLCYSAGVL
KILKEFRS
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mRNA from alignment at H-elongata_contig85008:2160..2633-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85008.16099.1 ID=mRNA_H-elongata_contig85008.16099.1|Name=mRNA_H-elongata_contig85008.16099.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig85008:2160..2633- (Himanthalia elongata Himel1 dioecious)
CATACAAGCGCTAACCTGTCTGCGTTGGAACAAAAGGCGAGGCCGATCGC GTGTGGTGACGTCCTCCGAAGAGTTATTGGAGCCGTTTTCTGCCGCAGAT ACGGCAGAAAACTTGCAGACTACTTCCAGCCTTGGGATCAGTATGGTGTT GCAGTGTCTAGCGGGGTAGAGATCATGTCCCTAACAGCCACACTGGGTTT CGAAGAGGGCTGCTCTATCCTCTCCTACGACGAGGCCAACGCCTTCAACA GCATGCACCGTCACATATTTCTGCCAGTGCTAGCGGAAATTGTCCCTTCA TTGGTTCCTTACGCGGCAAACTTATACGCCCGAGAATCACCTAAACTGTT GTTTGCGCTAGATGGCGGAGGAGTAGAAGTGGTTGAGTCTGCGCGGGGCG TACAGCAATGCTGCAACCTGGGCCCTCTTTGCTATAGCGCAGGGGTCCTC AAGATTCTGAAAGAGTTCAGGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig85008:2160..2633-

>mRNA_H-elongata_contig85008.16099.1 ID=mRNA_H-elongata_contig85008.16099.1|Name=mRNA_H-elongata_contig85008.16099.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig85008:2160..2633- (Himanthalia elongata Himel1 dioecious)
CATACAAGCGCTAACCTGTCTGCGTTGGAACAAAAGGCGAGGCCGATCGC
GTGTGGTGACGTCCTCCGAAGAGTTATTGGAGCCGTTTTCTGCCGCAGAT
ACGGCAGAAAACTTGCAGACTACTTCCAGCCTTGGGATCAGTATGGTGTT
GCAGTGTCTAGCGGGGTAGAGATCATGTCCCTAACAGCCACACTGGGTTT
CGAAGAGGGCTGCTCTATCCTCTCCTACGACGAGGCCAACGCCTTCAACA
GCATGCACCGTCACATATTTCTGCCAGTGCTAGCGGAAATTGTCCCTTCA
TTGGTTCCTTACGCGGCAAACTTATACGCCCGAGAATCACCTAAACTGTT
GTTTGCGCTAGATGGCGGAGGAGTAGAAGTGGTTGAGTCTGCGCGGGGCG
TACAGCAATGCTGCAACCTGGGCCCTCTTTGCTATAGCGCAGGGGTCCTC
AAGATTCTGAAAGAGTTCAGGTCTCATACAAGCGCTAACCTGTCTGCGTT
GGAACAAAAGGCGAGGCCGATCGCGTGTGGTGACGTCCTCCGAAGAGTTA
TTGGAGCCGTTTTCTGCCGCAGATACGGCAGAAAACTTGCAGACTACTTC
CAGCCTTGGGATCAGTATGGTGTTGCAGTGTCTAGCGGGGTAGAGATCAT
GTCCCTAACAGCCACACTGGGTTTCGAAGAGGGCTGCTCTATCCTCTCCT
ACGACGAGGCCAACGCCTTCAACAGCATGCACCGTCACATATTTCTGCCA
GTGCTAGCGGAAATTGTCCCTTCATTGGTTCCTTACGCGGCAAACTTATA
CGCCCGAGAATCACCTAAACTGTTGTTTGCGCTAGATGGCGGAGGAGTAG
AAGTGGTTGAGTCTGCGCGGGGCGTACAGCAATGCTGCAACCTGGGCCCT
CTTTGCTATAGCGCAGGGGTCCTCAAGATTCTGAAAGAGTTCAGGTCT
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