mRNA_H-elongata_contig8497.16094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8497.16094.1
Unique NamemRNA_H-elongata_contig8497.16094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8497.16094.1 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.100e-16
Identity = 53/75 (70.67%), Postives = 56/75 (74.67%), Query Frame = 3 
Query:    3 FCFVEYSNVEEAAKAIRALHGRKLYGRPLRVRFMAVEGAGRMDYSTS------ATSDSSG------KRSPTSGAG 191
            FCFVEYSNV++AAKAIRALHGRKLYGRPLRVRFM VEG GRMDYST+      ATS S G      K  PT GAG
Sbjct:  172 FCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAKIPPTPGAG 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8497.16094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT06_ECTSI1.100e-1670.67RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8497contigH-elongata_contig8497:3521..6248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size1564
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8497.16094.1prot_H-elongata_contig8497.16094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8497 4740..6224 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.2624042-UTR-H-elongata_contig8497:3520..47391622931253.2624042-UTR-H-elongata_contig8497:3520..4739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8497 3521..4739 -
1691679760.9696472-UTR-H-elongata_contig8497:3520..47391691679760.9696472-UTR-H-elongata_contig8497:3520..4739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8497 3521..4739 -
1622931253.311491-UTR-H-elongata_contig8497:6224..62481622931253.311491-UTR-H-elongata_contig8497:6224..6248Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8497 6225..6248 -
1691679761.0165915-UTR-H-elongata_contig8497:6224..62481691679761.0165915-UTR-H-elongata_contig8497:6224..6248Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8497 6225..6248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.2753334-CDS-H-elongata_contig8497:4739..47901622931253.2753334-CDS-H-elongata_contig8497:4739..4790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 4740..4790 -
1691679760.9784029-CDS-H-elongata_contig8497:4739..47901691679760.9784029-CDS-H-elongata_contig8497:4739..4790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 4740..4790 -
1622931253.2863293-CDS-H-elongata_contig8497:5418..55061622931253.2863293-CDS-H-elongata_contig8497:5418..5506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 5419..5506 -
1691679760.9878178-CDS-H-elongata_contig8497:5418..55061691679760.9878178-CDS-H-elongata_contig8497:5418..5506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 5419..5506 -
1622931253.2971826-CDS-H-elongata_contig8497:6042..62241622931253.2971826-CDS-H-elongata_contig8497:6042..6224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 6043..6224 -
1691679761.0055256-CDS-H-elongata_contig8497:6042..62241691679761.0055256-CDS-H-elongata_contig8497:6042..6224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 6043..6224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8497.16094.1

>prot_H-elongata_contig8497.16094.1 ID=prot_H-elongata_contig8497.16094.1|Name=mRNA_H-elongata_contig8497.16094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MLRKRPRPSVRFTGASCTAGRCECASWRSRGPAGWTTPRVPPPTVAASGR
RPLAQDSGERRAGGKIPPPTSSVGEAGIGAGVTKLSLDKKVALLKLKLRE
ANGKST*
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mRNA from alignment at H-elongata_contig8497:3521..6248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8497.16094.1 ID=mRNA_H-elongata_contig8497.16094.1|Name=mRNA_H-elongata_contig8497.16094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2728bp|location=Sequence derived from alignment at H-elongata_contig8497:3521..6248- (Himanthalia elongata Himel1 dioecious)
GGTTCTGTTTCGTGGAATACTCCAATGTTGAGGAAGCGGCCAAGGCCATC
CGTGCGCTTCACGGGCGCAAGCTGTACGGCCGGCCGCTGCGAGTGCGCTT
CATGGCGGTCGAGGGGGCCGGCCGGATGGACTACTCCACGAGTGCCACCT
CCGACAGTAGCGGCAAGCGGTCGCCGACCTCTGGCGCAGGATTCGGGTGA
GAGACGGCAAGAGTAACAAGAGGGGAGTCTGTCATGCAGACCATTCTTTC
CTCTGGCCCCGCCCCCGTCTCTTGTGTTTTTTTAGAACATCTATAAAGGA
ACAATTAGTGTTTTTAACGACTTGACCCAACAAACCCTAAGCAGCGGTGT
GTACACACGGATGTACACAGTAGTGTTTGTGTCGCATTGGCATTGATAAA
TACGAAGTACGAAGTAAATATACAAGTGACAAGTGAGTGTTCCTTTTTCC
ACAGTAGTATGTGTGTGTTGCTATTTTCCTCCCACGAGTTGTCATTTGTC
ACAACTTTTTTTTTTCCGTTTTTTTTTTTTTTTTTTTCCATCATACTGTT
TTCATTATACTGTACTGTTTCCATCTTACTGTTTTCAGTATTAACTGTTT
TCATTATTTGTTTTTATTATACTGCTTTCAGCATGCGGTTTTGAGCACAC
TATTTTTAGCTTAGTGTTAGCATGCTGTATTCGTCCTGTTTTGAGTGTAC
TGTTTTTACAAACGCACTGCACTGTTTTTAACGCGCTGAAAGTGCCGGGG
GCAAGATTCCACCTCCAACGAGCTCTGTGGGGGAGGCTGGGATTGGAGCA
GGCGTTACAAAGCTGTCCCTAGACAAGAAGGTATTGTGAAATATTTAGTA
ATGGCAAAACGCCTCCTTACATACATACCACCCGCTCCCCGCCTGGGAAA
GAACAATAACTATGTGCGATAGGCTATCCCCAATGGGAAGAGAGAGAGAG
AGTCTCAGTCTCGGGACTCTGTGTATCAATATAGTTCTTGTGACATACGT
TAAGACATGGAGTTTATGTTGAAGTGTGGATGTTCGGAGGGTTGGAATGA
GTTCATATGTTTTTTAAATAATAATACCATGTAAATAGTATATAGACTAA
TATAAATAATGTCATACCGCCACCTAGCATGAATAATAGATGCAGCTCCA
CAAGGCTAGAGTGTTACTTTTACGATTACTATATCATTGATGATGTGCTC
CACAGACAATGCGTCTGTGCCGCACTGCCCTCTTTTTTTTTCATTTAAAT
TCAAAGTCGAACAAACAAAAAATAAAACGGTCTCTCTTTCTTTGAGATCG
TTTTGCGTCCTCATTTGACTCAAGGAATCGTAAAATCAATTATATATGCG
TACGCCCCGTGTTGTTGGAGGCGTCTCTTGGAAAGCTCTGAGCTCACCTC
AAAAACCCATGTGCCTTCCGAACATCCACTACCACACCTTTGGGGGTGGG
GGGCACAGGTGGCGCTATTGAAGTTGAAGCTGCGTGAGGCTAACGGCAAG
TCAACATGACAGGGACAATACGAGCTTCGGCAGAAACAAGACGACGGAAG
CGGCGATGTCATTTGTCCACCATGGCAAGAAGTACTTTTTAAGGTCATCC
CGCCCCGCGTTTTAAGGTGCACGATAAAATAGGTTATTGTGTAATTTGGG
GGGGGGGGGGGGGGGGGGTACTTCCACTATGTTGAAGGCGTGTCGTATCC
TAACGGACATTGACCATATCATCATCCCAACAATGTCCGGATGGGGAACG
ATGTGCTAGTTTTTTCGCCGACCATGCTGCGTTCCGCGCAAGGATGATAG
CTTTTATTATTAGTGATCATCCTCTTAACCAGACATGCCATGAGTTTTAA
TTAATTCTAACACACCGGGTTAACCAAATCTTGCATTCGGCATGCTTGAC
TATACTATACTAACTATACTTCAAGTAGACTGGTGGAGGATGGAGGGGAG
GGAAAAATTGGAGGAAGCTCGGTTATCTCTCTGTTCAAGTGGCATTTACA
AAACTGGCCTCATATGTGGCGAAGGGGTAGACCATTCGAAAGGATGTATG
TACGTGTTAGCGAGGATAATATTTTCTAAGCATAACTGACAAAACGTCTG
TTTCGAATTTTGTTTTGTTTTGTTTTTTCACCGGGGGGGGGGGGGGTTCA
TTGTTGGTTGGCGTGTTTATGGTGTTTTCCATGCGAACCACGTCAAGAGT
TTTTCTCGCTTGCGGACGCAGCGCTTGGCCTTTTTTTATAATCCTGCCCA
CATGACTACACGGCTGCCGCTCGCAAAGTCGTCTGCCTCAAATCAGTTCC
GTAGACCGTGTTGTTGACAGCTGTAACGAGTAACAAAAGACCCATATTAT
AAATGAGGAAATTATATAGCCATAGCATTCTTCTTGGGAGTGTGCAAACC
GCGACACTCAAATCAATCTCTCCCTCTCGTGCGTGGCTTTTATGTAATGA
GTGCTATTATTGGCCGTTGCGTGTATTAATTAGTAGTATATCTTAAATAT
GTCTCGATTTAGACATCTATTTCAGGCATCATCAGCCTCGAGAAGAGTCT
TCTCTAGCAAAACTGTATGATGTAGCGTACACTGCGCTCTCGCGTTTTGT
GTCCAATATTTACGCTTTTTCGCTCTCTCTCTTCCCCCCCGCCTTAGGCG
CAACAGACACGCTACTAAATATAAAAACAAAGCCCCCTGATGGCACGTTA
CACTAATTATACTAGTTCTTGTCCCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig8497:3521..6248-

>mRNA_H-elongata_contig8497.16094.1 ID=mRNA_H-elongata_contig8497.16094.1|Name=mRNA_H-elongata_contig8497.16094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig8497:3521..6248- (Himanthalia elongata Himel1 dioecious)
ATGTTGAGGAAGCGGCCAAGGCCATCCGTGCGCTTCACGGGCGCAAGCTG
TACGGCCGGCCGCTGCGAGTGCGCTTCATGGCGGTCGAGGGGGCCGGCCG
GATGGACTACTCCACGAGTGCCACCTCCGACAGTAGCGGCAAGCGGTCGC
CGACCTCTGGCGCAGGATTCGGGTGAGAGACGATGTTGAGGAAGCGGCCA
AGGCCATCCGTGCGCTTCACGGGCGCAAGCTGTACGGCCGGCCGCTGCGA
GTGCGCTTCATGGCGGTCGAGGGGGCCGGCCGGATGGACTACTCCACGAG
TGCCACCTCCGACAGTAGCGGCAAGCGGTCGCCGACCTCTGGCGCAGGAT
TCGGGTGAGAGACGTGCCGGGGGCAAGATTCCACCTCCAACGAGCTCTGT
GGGGGAGGCTGGGATTGGAGCAGGCGTTACAAAGCTGTCCCTAGACAAGA
AGTGCCGGGGGCAAGATTCCACCTCCAACGAGCTCTGTGGGGGAGGCTGG
GATTGGAGCAGGCGTTACAAAGCTGTCCCTAGACAAGAAGGTGGCGCTAT
TGAAGTTGAAGCTGCGTGAGGCTAACGGCAAGTCAACATGAGTGGCGCTA
TTGAAGTTGAAGCTGCGTGAGGCTAACGGCAAGTCAACATGA
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