mRNA_H-elongata_contig84792.16076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84792.16076.1
Unique NamemRNA_H-elongata_contig84792.16076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.500e-35
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            +V+DSLT K+C KLS QILA NLTPAMYATQWFLTAFTQRFPYD VTRVWD+FLLEDWK+FYRVCLALFK
Sbjct:  178 FVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 247          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.030e-33
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            +V+DSLT K+C KLS QILA NLTPAMYATQWFLTAFTQRFPYD VTRVWD+FLLEDWK+FYRVCLALFK
Sbjct:  531 FVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 600          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A835Z8H8_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H8_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.700e-21
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            YV+D L  K+  +L   + + ++ P MYA  WF+T FTQ FPYD VTRVWDIFL EDWKI YRVCLALFK
Sbjct:  531 YVMDGLALKFTPRLHNHLKSNDIDPTMYAHPWFMTCFTQSFPYDLVTRVWDIFLKEDWKIMYRVCLALFK 600          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.620e-20
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            +V+DSLT+K+  KL   +   ++ P MYA  WF+T FTQ FPY+  TR WD+FL EDWKI YRVCLALFK
Sbjct:  514 HVMDSLTEKFVPKLFRHLQKHDIQPTMYAHPWFITCFTQAFPYELCTRTWDVFLEEDWKIMYRVCLALFK 583          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A225W6Z9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6Z9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.310e-17
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            +V + L  +Y  +LSA + +  L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  251 FVFEGLFKQYMPQLSAHLESEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A3R6VS27_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VS27_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.050e-16
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   28 YCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            Y  KL+  + A  L P MYATQWF+T ++  FP++FVTRVWDI+L E WKI YRV +AL K
Sbjct:   95 YVPKLTDHLAAEGLHPTMYATQWFVTLYSYSFPFEFVTRVWDIYLHEGWKIVYRVAVALLK 155          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A8J5IBD6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IBD6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.430e-16
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            +V + L  +   +LSA +    L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  202 FVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDTFLHEGWKVIYRVALALMK 271          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A485LF29_9STRA (Aste57867_20420 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF29_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.830e-16
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    4 VVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            + +  T  Y  KL+  + A  L P MYATQWF+T ++  FP++FVTRVWDIFL E WKI YR+ +AL K
Sbjct:  499 IFEQCTKTYLPKLTEHMDAEGLHPTMYATQWFITLYSYSFPFEFVTRVWDIFLHEGWKIVYRIAIALLK 567          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: H3GE06_PHYRM (Rab-GAP TBC domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE06_PHYRM)

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-15
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            +V  +L  +   +LSA +    L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  251 FVFQALLKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDSFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: D0MU62_PHYIT (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MU62_PHYIT)

HSP 1 Score: 79.0 bits (193), Expect = 1.190e-15
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
            ++ + L  +   +LSA +    L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  255 FIFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALMK 324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5V3_ECTSI1.500e-3585.71GTPase activating protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5L2H2_9PHAE1.030e-3385.71Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835Z8H8_9STRA8.700e-2161.43Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A835YV67_9STRA1.620e-2058.57Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A225W6Z9_9STRA2.310e-1755.71Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A3R6VS27_9STRA5.050e-1657.38Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]
A0A8J5IBD6_9STRA6.430e-1654.29Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A485LF29_9STRA8.830e-1652.17Aste57867_20420 protein n=1 Tax=Aphanomyces stella... [more]
H3GE06_PHYRM1.100e-1554.29Rab-GAP TBC domain-containing protein n=6 Tax=Phyt... [more]
D0MU62_PHYIT1.190e-1552.86Rab-GAP TBC domain-containing protein n=10 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84792contigH-elongata_contig84792:1831..2043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1e-28
Seed eggNOG ortholog2880.D7G5V3
KEGG koko:K19944,ko:K20133
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.4338243-CDS-H-elongata_contig84792:1830..20431622931251.4338243-CDS-H-elongata_contig84792:1830..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84792 1831..2043 +
1691679760.212015-CDS-H-elongata_contig84792:1830..20431691679760.212015-CDS-H-elongata_contig84792:1830..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84792 1831..2043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84792.16076.1prot_H-elongata_contig84792.16076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84792 1831..2043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84792.16076.1

>prot_H-elongata_contig84792.16076.1 ID=prot_H-elongata_contig84792.16076.1|Name=mRNA_H-elongata_contig84792.16076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVW
DIFLLEDWKIFYRVCLALFK*
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mRNA from alignment at H-elongata_contig84792:1831..2043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84792.16076.1 ID=mRNA_H-elongata_contig84792.16076.1|Name=mRNA_H-elongata_contig84792.16076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig84792:1831..2043+ (Himanthalia elongata Himel1 dioecious)
TACGTTGTGGATTCCTTGACAGACAAGTACTGCCACAAGCTTTCGGCGCA GATCCTGGCCTTCAATCTCACTCCGGCAATGTACGCGACGCAATGGTTCC TGACGGCATTTACCCAGCGCTTCCCGTACGATTTTGTGACGAGGGTATGG GACATCTTCTTGCTCGAGGACTGGAAAATATTCTACCGAGTGTGTCTCGC TTTGTTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig84792:1831..2043+

>mRNA_H-elongata_contig84792.16076.1 ID=mRNA_H-elongata_contig84792.16076.1|Name=mRNA_H-elongata_contig84792.16076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig84792:1831..2043+ (Himanthalia elongata Himel1 dioecious)
TACGTTGTGGATTCCTTGACAGACAAGTACTGCCACAAGCTTTCGGCGCA
GATCCTGGCCTTCAATCTCACTCCGGCAATGTACGCGACGCAATGGTTCC
TGACGGCATTTACCCAGCGCTTCCCGTACGATTTTGTGACGAGGGTATGG
GACATCTTCTTGCTCGAGGACTGGAAAATATTCTACCGAGTGTGTCTCGC
TTTGTTCAAGTGATACGTTGTGGATTCCTTGACAGACAAGTACTGCCACA
AGCTTTCGGCGCAGATCCTGGCCTTCAATCTCACTCCGGCAATGTACGCG
ACGCAATGGTTCCTGACGGCATTTACCCAGCGCTTCCCGTACGATTTTGT
GACGAGGGTATGGGACATCTTCTTGCTCGAGGACTGGAAAATATTCTACC
GAGTGTGTCTCGCTTTGTTCAAGTGA
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