mRNA_H-elongata_contig84576.16064.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84576.16064.1
Unique NamemRNA_H-elongata_contig84576.16064.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84576.16064.1 vs. uniprot
Match: D7G4A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A3_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.560e-37
Identity = 82/147 (55.78%), Postives = 94/147 (63.95%), Query Frame = 1 
Query:    1 RLMGEGVRVQEGESEEDFYGADLGGVTMSPGWRTIERDRGRTESASNGVP---PTGDGGPTITSEELRKLTIEHAADNHHENRLNAAYGSGFFGGGLMGAP-----GIAATMQARSRLVDDLLRSGRVQLAGVPISREASALRRLHQ 417
            R +GEGVRV+EGE+EE FYG   G +     W    RD  RTE AS          D GP +TSEELR++TI+HA DNHH +  +A  GSGF GGGL G       G  A  QARSR VDDLLRSGRVQ AGVP+ REA+AL RLHQ
Sbjct:    4 RAVGEGVRVKEGETEEAFYGEAFG-LGRRRRWAGPRRDGTRTERASRTTDRGQQEHDHGPRMTSEELRRITIDHAGDNHHVDPWDAGAGSGFLGGGLGGGRRGRFGGAEAASQARSRRVDDLLRSGRVQFAGVPVYREAAALLRLHQ 149
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BLAST of mRNA_H-elongata_contig84576.16064.1 vs. uniprot
Match: D7G1D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D8_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.290e-35
Identity = 86/147 (58.50%), Postives = 95/147 (64.63%), Query Frame = 1 
Query:    1 RLMGEGVRVQEGESEEDFYGADLGGVTMSPGWRTIERDRGRTESASNGVPPTGDGGPTITSEELRKLTIEHAADNHHENRLNAAYGSGFFGGGLM-----GAP---GIAATMQARSRLVDDLLRSGRVQLAGVPISREASALRRLHQ 417
            R +G+GVRV+EG +EE FYG   G V          RD  RTE AS          PTITSEELRKLTIEHA DNHH +  +A  GSGFFGGGL      GA    G  A+ QARSR VDDLLRSGRVQ AGVP+SREA+AL RLHQ
Sbjct:  123 RAIGDGVRVREGGTEEAFYGEAFG-VGRRRRRGGAPRDGIRTERASRTTNRDQGDEPTITSEELRKLTIEHAGDNHHVDPWDAGAGSGFFGGGLXXXXXKGARRFGGAEASSQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHQ 268
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BLAST of mRNA_H-elongata_contig84576.16064.1 vs. uniprot
Match: A0A6H5JN32_9PHAE (DUF4460 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN32_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.560e-35
Identity = 83/147 (56.46%), Postives = 93/147 (63.27%), Query Frame = 1 
Query:    1 RLMGEGVRVQEGESEEDFYGADLGGVTMSPGWRTIERDRGRTESASNGVPPTGDGGPTITSEELRKLTIEHAADNHHENRLNAAYGSGFFGGGLMGAPG--------IAATMQARSRLVDDLLRSGRVQLAGVPISREASALRRLHQ 417
            R MG+GVRV+EGE+EE FYG   G V          RD  RTE AS          PT+TSEELR+LTIEHA DNHH +  +A  GSGFFGGGL    G          A  QARSR VDDLLRSGRVQ AGVP+SREA+AL RLH+
Sbjct:  187 RAMGDGVRVREGETEEAFYGEAFG-VGRRRRRGGPPRDGIRTERASRTTDRDQGDAPTMTSEELRELTIEHAGDNHHVDPWDAGAGSGFFGGGLGXXXGRGVRRFGGAEAASQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHR 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84576.16064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4A3_ECTSI2.560e-3755.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1D8_ECTSI1.290e-3558.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN32_9PHAE8.560e-3556.46DUF4460 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84576contigH-elongata_contig84576:1642..2772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001930.1
Exons4
Model size417
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84576.16064.1prot_H-elongata_contig84576.16064.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84576 1648..2772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.4249337-UTR-H-elongata_contig84576:1641..16471622931250.4249337-UTR-H-elongata_contig84576:1641..1647Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84576 1642..1647 +
1691679759.7217722-UTR-H-elongata_contig84576:1641..16471691679759.7217722-UTR-H-elongata_contig84576:1641..1647Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84576 1642..1647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.4411495-CDS-H-elongata_contig84576:1647..17181622931250.4411495-CDS-H-elongata_contig84576:1647..1718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 1648..1718 +
1691679759.7309675-CDS-H-elongata_contig84576:1647..17181691679759.7309675-CDS-H-elongata_contig84576:1647..1718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 1648..1718 +
1622931250.464245-CDS-H-elongata_contig84576:2051..21051622931250.464245-CDS-H-elongata_contig84576:2051..2105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 2052..2105 +
1691679759.7470822-CDS-H-elongata_contig84576:2051..21051691679759.7470822-CDS-H-elongata_contig84576:2051..2105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 2052..2105 +
1622931250.479551-CDS-H-elongata_contig84576:2186..23851622931250.479551-CDS-H-elongata_contig84576:2186..2385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 2187..2385 +
1691679759.7597497-CDS-H-elongata_contig84576:2186..23851691679759.7597497-CDS-H-elongata_contig84576:2186..2385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 2187..2385 +
1622931250.4931657-CDS-H-elongata_contig84576:2685..27721622931250.4931657-CDS-H-elongata_contig84576:2685..2772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 2686..2772 +
1691679759.7687201-CDS-H-elongata_contig84576:2685..27721691679759.7687201-CDS-H-elongata_contig84576:2685..2772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84576 2686..2772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84576.16064.1

>prot_H-elongata_contig84576.16064.1 ID=prot_H-elongata_contig84576.16064.1|Name=mRNA_H-elongata_contig84576.16064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MGEGVRVQEGESEEDFYGADLGGVTMSPGWRTIERDRGRTESASNGVPPT
GDGGPTITSEELRKLTIEHAADNHHENRLNAAYGSGFFGGGLMGAPGIAA
TMQARSRLVDDLLRSGRVQLAGVPISREASALRRLHQ
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mRNA from alignment at H-elongata_contig84576:1642..2772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84576.16064.1 ID=mRNA_H-elongata_contig84576.16064.1|Name=mRNA_H-elongata_contig84576.16064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at H-elongata_contig84576:1642..2772+ (Himanthalia elongata Himel1 dioecious)
AGATTGATGGGGGAAGGGGTAAGAGTGCAGGAGGGTGAATCGGAGGAGGA
CTTCTACGGTGCGGACCTCGGCGGCGTGTTTCGGAGGTGAGTGAGTGAGT
GCGCGTCTCCTATTAAGCAGGTACCAGTGAACGTATAGAGTCGGAGCAGT
GCTCTCTGTCATCCGATTGGAAAAAGCTGATCGCCATAAATGAGAAAGCA
GAGGGTTCGAGAGATAGAGTGAGATGAGTCGATATTTTGAATTTTGATCC
CCCCGCCAATATCCTGTAGTTGACAGTCCTGTCGATTGTTTAGTAAGAGC
ATGTACTCTTCACCCCCTTGAACGTTATTACTCGTCGAGTGTTCCCCCCT
TGAATGTATCCCCTCGGACGGGGAAAATCCACGTGGCATCTACACGCCTT
CCCGGGGGAGTACCATGTCACCAGGATGGCGAACGATCGAAAGGGACCGG
GGGCGGACAGAATCGTTCGACATATTTGATCATGAAGCCGCCGATCCCAT
TACATAATGCGAACCCGATCGCCTAAAAAATAATGCTCTCGTTAGGGCTT
CAAACGGTGTTCCACCGACGGGCGACGGAGGACCAACGATAACTTCAGAG
GAGCTGAGAAAGTTAACCATCGAGCACGCTGCGGACAATCATCACGAGAA
TCGCTTGAACGCCGCCTACGGGTCCGGGTTCTTCGGCGGCGGATTGATGG
GAGCCCCGGGAATTGCTGCGACGATGCAAGCGCGTTCTCGACTGGTAATA
ACCGTGTCGCTTTTTTATTTTCTGTTTCATCTAATATAGCCCTAATTATC
GACCGCTGTGACACTTGCTTCGATGTCCATTTCCGTCATATTTCGTTCGT
ACCTTATGAAAAATTCGCGCTGTAATCCAACACTCACTATAGTGCTTCCT
ATTATACCGAACAACCGCCAAGTCTCGCATATAGAGGAAGACTCATCACG
GGAGCGTGCATTTTTTATTTATTCTTTGTGTATTTCTTTTTGTGCGCCGA
CGCGGTGGTCGGCTTACTGTGGGATTTCCGATCGACCTGCTCAGGTTGAC
GACCTTCTACGAAGCGGCCGAGTGCAACTCGCGGGAGTTCCGATCTCAAG
GGAGGCATCAGCGCTCAGGCGGTTGCACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig84576:1642..2772+

>mRNA_H-elongata_contig84576.16064.1 ID=mRNA_H-elongata_contig84576.16064.1|Name=mRNA_H-elongata_contig84576.16064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig84576:1642..2772+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGAAGGGGTAAGAGTGCAGGAGGGTGAATCGGAGGAGGACTTCTA
CGGTGCGGACCTCGGCGGCGTATGGGGGAAGGGGTAAGAGTGCAGGAGGG
TGAATCGGAGGAGGACTTCTACGGTGCGGACCTCGGCGGCGTTACCATGT
CACCAGGATGGCGAACGATCGAAAGGGACCGGGGGCGGACAGAATCTACC
ATGTCACCAGGATGGCGAACGATCGAAAGGGACCGGGGGCGGACAGAATC
GGCTTCAAACGGTGTTCCACCGACGGGCGACGGAGGACCAACGATAACTT
CAGAGGAGCTGAGAAAGTTAACCATCGAGCACGCTGCGGACAATCATCAC
GAGAATCGCTTGAACGCCGCCTACGGGTCCGGGTTCTTCGGCGGCGGATT
GATGGGAGCCCCGGGAATTGCTGCGACGATGCAAGCGCGTTCTCGACTGG
GCTTCAAACGGTGTTCCACCGACGGGCGACGGAGGACCAACGATAACTTC
AGAGGAGCTGAGAAAGTTAACCATCGAGCACGCTGCGGACAATCATCACG
AGAATCGCTTGAACGCCGCCTACGGGTCCGGGTTCTTCGGCGGCGGATTG
ATGGGAGCCCCGGGAATTGCTGCGACGATGCAAGCGCGTTCTCGACTGGT
TGACGACCTTCTACGAAGCGGCCGAGTGCAACTCGCGGGAGTTCCGATCT
CAAGGGAGGCATCAGCGCTCAGGCGGTTGCACCAGGTTGACGACCTTCTA
CGAAGCGGCCGAGTGCAACTCGCGGGAGTTCCGATCTCAAGGGAGGCATC
AGCGCTCAGGCGGTTGCACCAG
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