mRNA_H-elongata_contig8434.16047.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8434.16047.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE) HSP 1 Score: 1477 bits (3825), Expect = 0.000e+0 Identity = 1049/2423 (43.29%), Postives = 1312/2423 (54.15%), Query Frame = 1
Query: 1 LDDDVQVEPFHVHINPSFLQSLTSYVTPILFDEGSPEAVEVPFPHPRS-LFAALHRSGATPSPCPGRGCNFTSRSGE---DLGQAAGL------GDR-GIEFERSARTASASVRLLSSQLSLELASSHPGGAAFVVSTSHVFIRAITWRSDAARGSS-GSVAEGERRPAKTGVQAGPEMFARLTRVTCSVKCCRGGGRDGASVISSGGIAVAPLSSVPVEGDVRLDQQVLTPLDVDVHVTR----------SVSSGLSLGGTYF-----WHAGVAVDELSLKLSAAHTQSLELLAKAFLPVVAAAERAAAELSRMGNDQSAPVGSRN-AKVRRADDLLELDRVDSVESSGEAPA-KPEPGQAVFYDM---------RGMSAAVTAADLWGAAQSPSE---KQRGD-----GWVKCVEWCYQGLRRVVQVVLPYAPLRGSAQLYEGLVLDSLEVELRFRDPLTGAFVTATRFSVPCNKSRGSDAPGRPRPTVEPAQPCFARTWQLAWRIPAWLRSRA-NLSAPLDPSAVSNWSSILSRGLSVRSSPASPASCPSHISATLVTKRLTLALLTDSEPSSKS------WTSCSSLPRRSS---FLQSEEIMRITASDVHAHAEKDVGVASATVWAARGSALVNVEVQDFGNFLRLPLVSHGLLEWNISGRVRGKDKSNEGGGVRGDGDGGDLLSPHRPVVAVAAELRDAVVSVSVTAVQCLDRCIGEFSLRRTSARAPTREAGEKSAITAKAATVGIEAGATGKRQSRRRSSNRYVIENLTDRTLWFGQVSTTETLLLRTGEEISYRWRKIP-AXXXXXXXXXXXXXXXXXXXXXXXXH--------YHGSGND----LGVWTEPFVADQAGAFMRLLRSAEPRERAGAEPRSMYGDEEDGMALPLWIAVTKEGLVTRISLHGEWVFTNHLPQEVQVAWATSVGVGNAGRGSSEPAGTRGGLTLVGCGPDKESDGLDPGQEAEVPLPPSSSALTACIPSRGVHAGEGKGRISELMLEFRLAAPGASAVVGSVGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISRRGSDITEASEAESVSDAAASVRPWAVTRQSEWVEPRPGIHVALISCASPEPGSSGFWFWCVASRQTSRLSDCAACVSRLKRHRCHLGQMRIDLRPVAVVWNRCSQPVRAVLTGRGSGRDWPECAVHAETPGTVGHS-QLRGASGKEEAQVYSHERRRVVSPCRPSRWKPGVQPGGRVAVCGNPFVDYDLTLSLPGKERKAEVRPLFVSVPSELLSRRCASSWLPLHGRALVDNVLCPLVVVASRVVDDHWPSLSLRVYPGLSVQNYLPVPLSLRVVFERPLPDDVIDGEQAAGSGCNYSVVGRRESSQGGAANDQSEDSGAPLLRSEVSGENASSTWTPLSGNIDGGSGVVLQDTSPSSR---RVTQMFRVPAESRHSAWDMFDGN-GVPIPYLLSGVSMDMGLDDSAGKSTAFVGTSGRA-FDTEVTEAVSAASKPGAV-----ATRRSRTLKFRLDGELNELVLVPWMPDSGAVIPAFVKMERELVFGGVELIRLEVHPRVVVHNATSFSVSVSLLRRANALKGSGGDGDDYDQAIPSCRVTLAPGGTGSSMAVLAMPGKSLY-------------------EEEGEDRRLDDPEGRWASPGSRGRISRSLAWLLSSTTYSAALDQPPGFCANLEVALEREE------------IKGPDAPHTI-PTGDR---NGDQEGARDHERLNDVTLSRGRPLTVKRKSDVVSLHEASGGAPLRFKPAHLTVAADGGRRMIGVCVVATETSLGTEATP-TRHVVLHHPP-PSLVVVNRSAGAVTLLFECGALVEVGPGSSAEHSWESAPREESGGTDG-------------------------------------------------ASSSGTPAQXXXXXXXX---------------RLNCA----GSTTPQKA-RPPSTLGGDATLQHWFQCKGGSRADESLSWSDPYWVARGVQVIRF----AKHAPPTGDREFHSEGSMYFPGGEEE---------TREVQMHVMERVGGFVMSFAEGGFEDSRLDTDDIEDAPAVAGN---SRGVLRRWASTVEHHMVLSVSGTIFQLLDETNLQSVVGSDQA--ESGARSGAASPNGPGMAGWIGGTWDGPGGLLSDGVSAQLPTAAIPTILSVFLDATSIRMWRAAPAARPGMSTLDLERSWHLKSRIGVDISLGTLQIDNHVAGHNLPVLFCFRKGGRLVDGEGEGRGDGGHE--RGDCRLSISLILAEPLEHSGVLPYMEKLYVRSAPIDVCLEDVLVEPLTQFTCLGGSVVDVSNFSTGDGGSPSRWSRG-NPAGPP---------------FPDALGSVLETRLFIQHVDIGALVVRATVQGHIPGKQV 6603
LD +QV+PF +H+NPS L+S T+Y+ P+ F EG PE EV FP + L H S + P N +R G+ D G A G+ G R FE+SA TAS SVR+L+SQ++LEL SS+PGG AF+ STSHVF+RAITW SDA R ++ GS EG GVQAGPE+FARL+RV C VKC + G A+V + V P SS P D +L VL P DVDVH+TR ++++G++ + + WHAGV VDEL L+ + H +SLELL+ FLP V AAE A EL R G + G + A R DDL LDRV+ E +G A A KP PGQAVFY + R + A+ A G A+ E ++ G+ GWV C EW Y GLRRV QV P PL GS L EGL + SLEVEL F DPLT P S G R T+EP+QP ARTW+L+WR+P+WLR +A P A+S WSS L R LS+RSSP+ P PS++SATLV +RLTLALLT+ S+S S RR F+Q EEI+R+ +DV+ AE + +V AARGSA+V +VQDF NFLRLPL+SH ++ ++S S GG R +G LLSP RP+ + A ++ AVVS+SVTA+QC+D+CI E + R+ S TR + +A AK + V + R+ R+RS RY+I N TDR LWFGQVSTTETL LR GEE YRWR IP H Y G+G++ G WTEPF D G F +E D + LPLW+ V K GL TRI+ HGEWVFTNHLPQE+QVAW TS GVGNAGR EP GTRGGL+L C +DG P S SALTA S G +G GR+SELMLEFRL+ P A+A VGSVGPP + RRG D E + + +S PW VTRQSEWV+ RP + +ALISCAS +PG SGF FWCVASRQ SR ++ HR +LGQMRIDL P+A+VWN S P+RAVL R G WPE + P T+ + +G +G + + R S SR ++PGGR AVC PFVDYDL ++ G + P VSVP+ELLSRRC S+WLPLH RAL DN+L PLVVVASR++D +WPSLSLRVY GLSV+N+ VPLSLR F RPL DGE +A V R E + LLR S S ++DGG G D R RV++MFR AES HSAWDMF G+ G IP+LL VS+D+GLD S + S RA + + V SA PG A RRSR LK L ELNELVLVPW SG V+P +ERE+V GGVELIRL ++PRVVVHNAT VS+SLL A+ G ++A+P CRV L P G+GS M +LA+PG+ E GE R P PG GR+SR +LSS +Y A+ P GF A+LE+A ++ + G AP T P G+ G + ++D N++ V SL E S G+ L P+ LTV G R + V + T A P RHV+++ P P L + NRS VTLL +CGALVEV PG + EHSW P ++ G++G +S+ +P Q X R +C GS +KA R P LGGDATLQHWFQCKGG++ D LSWSDP WVARGVQV+RF + G R GS GG ++ REVQ+HV+ER GGFVMSFAEGGFE + D + ++ A + SRGVL RWAST+ H+V++VSG QLLD++NLQ+ + Q + A + AAS GM GW+GGTW PGGL SDG SA LP AAIP I+SVF+DA+S+R+WRAAPA RPGMS+LDLERSWHLK R+G+D+ LGTLQID+HVAGH LPV+FCFR+GG LV+ G G G + +G CRL++SL+LAE E S V Y+EK+ + SAPIDVC ED L+ PL + + S GD SP ++ N GP P ALG+ + RLFIQ VDIGALVVRATVQG+IPGKQV
Sbjct: 2068 LDVVLQVQPFDIHVNPSILRSFTAYIAPVPFVEGFPEEEEVLFPQRQPPLTTPCHSSSSKPH-------NSATRHGDGAADDGAAGGVECASSSGQRLSTNFEKSALTASGSVRVLASQVTLEL-SSYPGGPAFMASTSHVFLRAITWPSDAMRAAARGSSGEG-------GVQAGPEVFARLSRVECRVKCGQESGGSAATVQNRA--RVGP-SSQP---DDQLGDTVLKPFDVDVHLTRPGASSARGVAALAAGVNTTASEYPVTQGWHAGVYVDELYLRCAPLHVRSLELLSDLFLPAVTAAELTAVELGRGGRSRGTASGLQGLAGGGRIDDLAALDRVECREPAGHADAVKPGPGQAVFYGVGTTPQGGRPRRVGASSDGAGASGVAEEEKEAGGRKEGEEEGRGGWVHCCEWRYWGLRRVAQVAFPRLPLCGSVPLLEGLAVTSLEVELSFVDPLTET------VKAPNGSSDDFVLAGGSRVTIEPSQPILARTWRLSWRVPSWLRFKAAGAGGAPKPPAISAWSSALLRTLSIRSSPSGPVVGPSYVSATLVAQRLTLALLTEGGAISRSSSXXXXXAPVSPSRRREGLGVFVQPEEIVRVVIADVNFFAEASLAARWLSV-AARGSAVVAADVQDFSNFLRLPLLSHAAVKLDVS------TSSVRGGTGRMAAEGESLLSPFRPIASGAVDVNGAVVSMSVTAMQCIDQCIAELT-RKPSDEPATRRS--TTAAEAKPSVVAVPTPVPPSRRPRQRSK-RYIITNHTDRNLWFGQVSTTETLFLRAGEETLYRWRTIPRTLAAGAAGRKGDDASRLVLMLRLALHRVSGSGGGYAGAGSERGGWYGAWTEPFPVDHVGTFK---------------------EESDLVTLPLWVEVDKNGLETRIAFHGEWVFTNHLPQEIQVAWVTSAGVGNAGRCLVEPTGTRGGLSLEACSTSGRADGSL--------HPVSCSALTASSSSLGTGQAQG-GRLSELMLEFRLSTPDAAAFVGSVGPPPVATEDLGGHPAAARDADGLGDGG-------SYDRRGLD-DELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGGWPE-----QPPATLAEAVDEQGGAGTGHTADRNDDPRANYSL---SRTTSAIRPGGRTAVCQRPFVDYDLAVASTGTAA-CQAAPFLVSVPAELLSRRCESTWLPLHSRALSDNILSPLVVVASRLLDANWPSLSLRVYSGLSVENHTSVPLSLRADFIRPLLGS--DGEPSAQQPAEAPVTERGEPERAQTEXXXXXXXXXXLLRRRGS----------ESVSVDGGGG----DAGSGRRAVARVSRMFRAGAESCHSAWDMFHGSEGFSIPFLLPHVSLDIGLDSREEASPSPATASVRAGWSSLVPPGRSADEVPGGPTPPTPAERRSRKLKVSLAEELNELVLVPWEASSGVVLPVLATLEREVVLGGVELIRLALYPRVVVHNATGVPVSLSLLGGAHVAAEDKSGGGARNEALPMCRVRLTPEGSGSRMNLLAIPGERALPGLDASHHGFPQSAAGREGERAGEGRGF--PLENVPRPGLLGRLSR----ILSSGSYKASSAHPAGFSADLEMAFGWDDRADQASAADSGAVDGRGAPPTARPAGNEAASTGATKWSQDGCGANELP--------------VFSLCEPSAGSSLASHPSSLTVPGGGQRAVRVYIAVEPPGAEPTSAAPLARHVLIYRDPQPDLTICNRSTDTVTLLLDCGALVEVAPGGTVEHSWRKEPTRDANGSNGXXXXXXXXXXXXXXXXXXXXXXXXASMTGRHSRRWSEDSRGVVDTPTPMSSAPSSPVQARPGTAAXXXXXXXXXTGAALDARRSCVSGPGGSPALRKAARAPGKLGGDATLQHWFQCKGGAKGDVFLSWSDPLWVARGVQVLRFDGQNGSNEESWGHRGIAEGGSGEGGGGRDDGRKGFGTGSAREVQVHVVERAGGFVMSFAEGGFEGAAADCVGVVESGARDNHHLESRGVLGRWASTLGQHVVVTVSGVSLQLLDDSNLQAFAANGQGGNSTAAAARAASDRLGGMDGWVGGTWAEPGGLPSDGASAHLPAAAIPAIVSVFVDASSVRLWRAAPAVRPGMSSLDLERSWHLKDRVGIDVCLGTLQIDSHVAGHRLPVIFCFREGGPLVEVSEIGMGMPGDDQVKGGCRLAMSLVLAESWEDSRVPSYLEKVSIHSAPIDVCFEDSLLPPLLLLL----ERLGIGAASPGDRSSPYPFAASANDRGPGSAAQGGLPSERSPQLLPPALGANVVPRLFIQRVDIGALVVRATVQGYIPGKQV 4356
BLAST of mRNA_H-elongata_contig8434.16047.1 vs. uniprot
Match: D8LCN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN3_ECTSI) HSP 1 Score: 244 bits (623), Expect = 2.550e-67 Identity = 162/367 (44.14%), Postives = 192/367 (52.32%), Query Frame = 1
Query: 2365 WTEPFVADQAGAFMRLLRSAEPRERAGAEP--RSMYGDEEDGMALPLWIAVTKEGLVTRISLHGEWVFTNHLPQEVQVAWATSVGVGNAGRGSSEPAGTRGGLTLVGCGPDKESDGLDPGQEAEVPLPPSSSALTACIPSRGVHAGEGKGRISELMLEFRLAAPGASAVVGSVGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISRRGSDITEASEAESVSDAAASVRPWAVTRQSEWVEPRPGIHVALISCASPEPGSSGFWFWCVASRQTSRLSDCAACVSRLKRHRCHLGQMRIDLRPVAVVWNRCSQPVRAVLTGRGSGRDWPE---------------CAVHAETPGTVGHSQLRGA 3414
W P + A RLLR AE + GA+ R E D + LPLW+ V K GL TRI+ HGEWVF N+LPQE+QVAW TS GVGNAGR EP GTR GL+L C + G + PL S SALTA S G G+ R+SELMLEFRL+ P A+A VGSVGPP + RG D E + + +S PW VTRQSEWV+ RP + +ALISCAS +PG SGF FWCVASRQ SR ++ HR +LGQMRIDL P+A+VWN S P+RAVL R G WPE H TPG +LR A
Sbjct: 10 WARPSEEAELAAA-RLLRGAEAEGQVGADASARGAGHQESDFVTLPLWVEVVKNGLETRIAFHGEWVFANYLPQEIQVAWVTSAGVGNAGRCLVEPTGTREGLSLEACATSGRAGG------SLHPL--SCSALTASSSSPGAGQAHGE-RLSELMLEFRLSTPDAAACVGSVGPPPVATEDSAGHPAAARDAGGFADGG-------SFDSRGLD-DELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGGWPEQPPATLAEAVDEQGSLVAHPPTPGVDRSVRLRRA 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8434.16047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8434.16047.1 >prot_H-elongata_contig8434.16047.1 ID=prot_H-elongata_contig8434.16047.1|Name=mRNA_H-elongata_contig8434.16047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=2207bp LDDDVQVEPFHVHINPSFLQSLTSYVTPILFDEGSPEAVEVPFPHPRSLFback to top mRNA from alignment at H-elongata_contig8434:186..9944- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8434.16047.1 ID=mRNA_H-elongata_contig8434.16047.1|Name=mRNA_H-elongata_contig8434.16047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9759bp|location=Sequence derived from alignment at H-elongata_contig8434:186..9944- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8434:186..9944- >mRNA_H-elongata_contig8434.16047.1 ID=mRNA_H-elongata_contig8434.16047.1|Name=mRNA_H-elongata_contig8434.16047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=13242bp|location=Sequence derived from alignment at H-elongata_contig8434:186..9944- (Himanthalia elongata Himel1 dioecious)back to top |