mRNA_H-elongata_contig84174.16031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84174.16031.1
Unique NamemRNA_H-elongata_contig84174.16031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: D8LAY6_ECTSI (Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 1.460e-111
Identity = 173/212 (81.60%), Postives = 194/212 (91.51%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVRG 636
            VYDD YQGSL E WHV+VQARLRMDVH+LLGQQSP DLIVRGDRYSRKVRAFSS PAEV+FEP + FQLVPGAYNRVE+RF+PLS GSR+IHVH+VDV+SMEIVGAWLATATAMPPV+TKSY+V+LPLGRACHKRIAYSN W++T+LFRLASS+P ILRPRYESLEVAG GTG+ RLWFAA G  + RKEAFLFVND +GQ+EECLLI +RG
Sbjct: 2829 VYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRKVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDVDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWNTTRLFRLASSDPRILRPRYESLEVAGGGTGFLRLWFAAPGGTNVRKEAFLFVNDSEGQNEECLLICMRG 3040          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A836CDE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE8_9STRA)

HSP 1 Score: 234 bits (596), Expect = 5.860e-75
Identity = 117/211 (55.45%), Postives = 151/211 (71.56%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVR 633
            ++DD+ +  L EIWHV+V +RLR+DVHA LGQ S  +L+VRGDRYSR+VR FSSAP +  F+P +TFQLV GAYNRV                H+VDV++ E+VGAWLATATA+PPVVTK+ E+DLP+G+  HKRIAY+N WS  + FRL SS+ +++ PR+  LE A  GTG+ RLW  A  + +   E FLFVND   Q+EECLLIR+R
Sbjct:   13 LHDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAANLVVRGDRYSRRVRCFSSAPGDCEFDPPTTFQLVSGAYNRV----------------HMVDVDTQELVGAWLATATALPPVVTKTNELDLPVGKESHKRIAYANPWSQARAFRLRSSDETVMAPRHGGLEAAAGGTGFIRLWLHA-PDAAGSAEVFLFVNDENDQNEECLLIRMR 206          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A835YU49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU49_9STRA)

HSP 1 Score: 241 bits (614), Expect = 9.370e-70
Identity = 121/226 (53.54%), Postives = 156/226 (69.03%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLE----------------------VAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEE 612
            +YDD+ +  L EIWHV+V +RLR+DVHA LGQ S  DL+VRGDRYSR+VR F+SAPA+  F+P STFQLV GAYNRV+MR++P   G  +I VH+VDV++ E+VGAWLATATA+PPVVTK+YE+DLP+G+  HKRIAY+N W   + FRL SS+ +++ PR+  LE                      VA  GTG+ RLW  A  + +   E FLFVND   Q+EE
Sbjct: 3058 LYDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAADLVVRGDRYSRRVRCFTSAPADCEFDPPSTFQLVSGAYNRVDMRYRPTRTGGSKIQVHMVDVDTQELVGAWLATATALPPVVTKTYELDLPVGKESHKRIAYANPWLQARAFRLRSSDETVMAPRHGGLEXXXXXXXXXXXXXXXXXXXXXXVAAGGTGFIRLWLHA-PDAAGSAEVFLFVNDENDQNEE 3282          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S2QW27_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QW27_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.440e-61
Identity = 93/210 (44.29%), Postives = 153/210 (72.86%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
            VYDD YQG + E WHVVVQ+RLR+DV+A +GQ +P++L+++GD+++R+V  +SS+PAE  F+P   FQLVPGA+NR  ++F+    GS++IH+H+VD+++ E+V AWL T  +  PV+TK Y+V +P+G  C K+++++N W  T+ ++L SS+P++++PR  ++++     GY RL+F  +  + T +E  LFVND +  +EE  L++V
Sbjct: 2261 VYDDHYQGVVHECWHVVVQSRLRLDVNAAVGQSTPSELVIQGDKFARRVMVYSSSPAETFFDPSRPFQLVPGAFNRAAVKFRMKQAGSKKIHIHMVDLDTKELVCAWLVTVNSALPVITKVYDVQVPIGVGCSKKLSFTNQWDRTRRYKLMSSDPAVMKPRNPTVDIEPRAIGYMRLYFNPIDVVGT-EEVILFVNDEQDMNEEAFLLKV 2469          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S2HFZ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFZ8_9STRA)

HSP 1 Score: 202 bits (513), Expect = 3.580e-61
Identity = 92/213 (43.19%), Postives = 138/213 (64.79%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSI-GSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVRG 636
            +YDD+Y   L EIWHV V +RLR D+ A LGQ SP +L+VRGD Y R+V+A+SS P E+ F P   F L P  YN++E+R+ P    G RR+HVH+VD+++ E+V AW+ T  A PP +TK Y+VD+ +G   HK++++ N WS  +LFRL S++P+++RP+ + LE+      + +L+ +         E +L VND + Q+EEC  I +  
Sbjct:   85 IYDDRYSARLNEIWHVTVASRLRKDIQATLGQASPMELVVRGDGYRRRVKAYSSEPREIKFLPADVFHLAPQQYNKLELRWTPFGTDGMRRVHVHLVDIQTGELVCAWIVTTVATPPAITKDYQVDVAVGEGSHKKVSFDNPWSRHRLFRLRSTDPNVMRPKTDELEIPPRDRAFIKLYISPFLRPGFA-EVYLLVNDEEDQNEECFRIVINA 296          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S1XUC6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC6_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.770e-57
Identity = 102/218 (46.79%), Postives = 144/218 (66.06%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGS--RRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEI---STRKEAFLFVNDIKGQSEECLLIRVRGI 639
            VY D YQ  L E+WHV V ARLR+D+HA  GQ    DL+VRGD ++R+VRA+SS P EV+F+    F LV G+YNR+ +R++P  + S  +RI VH++D ++ ++V  W+ATAT   PVVT++++VD+ +     KRI YSN WS  + F+L SSNP ++RPR   LEV    +GY RL  A  G+       +E  LFVND +  +EEC L+R+RG+
Sbjct: 1342 VYRDPYQAQLRELWHVHVNARLRLDLHATAGQAVTADLVVRGDSFTRRVRAYSSLPKEVSFDQAGEFALVAGSYNRIGLRYRPTGLSSVTKRISVHLIDADTQQLVCGWIATATTAAPVVTRTFDVDVTVDDEASKRIPYSNPWSRRRAFKLISSNPGLVRPRSARLEVEARASGYIRL--ALNGDAIDAGAVEEVLLFVNDDEDNTEECFLLRLRGV 1557          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: T0RSH2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSH2_SAPDV)

HSP 1 Score: 200 bits (509), Expect = 1.200e-55
Identity = 94/210 (44.76%), Postives = 139/210 (66.19%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
            +YDD Y   L EIW + +Q+ +R+D+HA +GQ    +LIV+GD   R+V  FSS P E+ F+P   FQL+P A+NR+E+RF  + + +++I VH+VDV+S ++VGAWL   T   P+VTK ++V LP G    K+I+Y N W   + F L S++PSI++PR   L++ GNG GY RL FA    +   K+ +LF+ND + Q+EECLL  +
Sbjct: 3407 LYDDMYHARLHEIWRIHIQSMMRLDLHATMGQGVQNELIVKGDAMPRRVSCFSSHPTELQFKPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPIVTKVFDVTLPTGVPVLKKISYRNPWDEDRSFVLRSNDPSIMKPREPRLQLQGNGDGYLRLAFAP-HSLPCSKKVYLFINDHQDQNEECLLFHL 3615          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S2C1Z8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1Z8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.860e-54
Identity = 95/213 (44.60%), Postives = 137/213 (64.32%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSI-GSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVRG 636
            ++DD ++  L EIWHV+V +RLR DV A LGQ SP +  V GD + R VRA++S   E  F P S FQLVP A N  +  F PL   G+R+ HVH+VDV++ ++V AW+ T  A PP VTK Y+VD+ +G A HK+I+Y N W+  + ++L SS+P+++RP+   L++  +G  + RL+ A L     R E FL VND +GQ+E+C  + V  
Sbjct: 1646 IFDDPWRCRLSEIWHVIVASRLRKDVQAKLGQASPIEFTVPGDNHLRHVRAYASNELETRFLPSSVFQLVPNAVNSFKASFTPLGAPGTRKTHVHLVDVDTKQLVAAWILTCVAAPPQVTKDYDVDVRVGEAAHKKISYENPWNRRRSYQLMSSDPNVMRPKVNELQIQPHGREFMRLYIAPLDRAG-RVEVFLMVNDERGQNEDCFRVIVNA 1857          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A6G0XXV1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXV1_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.930e-54
Identity = 99/210 (47.14%), Postives = 138/210 (65.71%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
            +Y+D Y   L EIW + VQA LR+D+ A +GQ    +LI++GD   R+VR +SS P EV F PD  FQL+P A+NR+E+ F  + I  ++I V++VDV+S E+VG+WL   T   PVVTK ++V LPLG    K+I+Y N W   +LF L SS+PSI++PR   L + G G G+ RL FA    I+  K+ +LF+ND   Q+EECLL+ V
Sbjct: 3075 LYEDMYHARLFEIWRICVQAMLRLDLQASMGQGVRNELIIKGDTMPRRVRCYSSQPHEVQFNPDRIFQLLPHAFNRIELLFCSMEIRIKQIVVNLVDVDSYELVGSWLLNTTTTEPVVTKVFDVTLPLGVPVLKKISYRNPWDDDRLFILRSSDPSIMKPRERKLLLPGYGDGFLRLAFAP-HSIACSKKVYLFINDGSDQNEECLLLHV 3283          
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A067CRA1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRA1_SAPPC)

HSP 1 Score: 196 bits (498), Expect = 3.580e-54
Identity = 93/210 (44.29%), Postives = 137/210 (65.24%), Query Frame = 1
Query:    1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
            +YDD Y   L EIW + +Q+ +R+D+HA +GQ    +LI++GD   R+V  FSS P E+ F P   FQL+P A+NR+E+RF  + + +++I VH+VDV+S ++VGAWL   T   PVVTK ++V LP G    K+I+Y N W   + F L S++ SI++PR   L++ GNG GY RL FA    +   K+ +LF+ND + Q+EECLL  +
Sbjct: 3252 LYDDMYHARLHEIWRIQIQSMMRLDLHATMGQGVQNELIIKGDAMPRRVSCFSSHPNELQFNPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPVVTKVFDVTLPTGVPVLKKISYRNPWDEDRNFVLRSNDASIMKPREPRLQLRGNGDGYLRLAFAP-HSLPCSKKVYLFINDHQDQNEECLLFHL 3460          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAY6_ECTSI1.460e-11181.60Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A836CDE8_9STRA5.860e-7555.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YU49_9STRA9.370e-7053.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2QW27_9STRA1.440e-6144.29Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
A0A7S2HFZ8_9STRA3.580e-6143.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XUC6_9STRA2.770e-5746.79Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
T0RSH2_SAPDV1.200e-5544.76Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7S2C1Z8_9STRA1.860e-5444.60Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0XXV1_9STRA1.930e-5447.14Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A067CRA1_SAPPC3.580e-5444.29Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84174contigH-elongata_contig84174:159..1646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue2.8e-98
Seed eggNOG ortholog2880.D8LAY6
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size642
Cds size642
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84174.16031.1prot_H-elongata_contig84174.16031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84174 159..1646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.9518359-CDS-H-elongata_contig84174:158..3851622931246.9518359-CDS-H-elongata_contig84174:158..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84174 159..385 +
1691679758.2896774-CDS-H-elongata_contig84174:158..3851691679758.2896774-CDS-H-elongata_contig84174:158..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84174 159..385 +
1622931246.9712496-CDS-H-elongata_contig84174:773..10441622931246.9712496-CDS-H-elongata_contig84174:773..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84174 774..1044 +
1691679758.3034406-CDS-H-elongata_contig84174:773..10441691679758.3034406-CDS-H-elongata_contig84174:773..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84174 774..1044 +
1622931246.9903278-CDS-H-elongata_contig84174:1502..16461622931246.9903278-CDS-H-elongata_contig84174:1502..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84174 1503..1646 +
1691679758.3141077-CDS-H-elongata_contig84174:1502..16461691679758.3141077-CDS-H-elongata_contig84174:1502..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84174 1503..1646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84174.16031.1

>prot_H-elongata_contig84174.16031.1 ID=prot_H-elongata_contig84174.16031.1|Name=mRNA_H-elongata_contig84174.16031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVR
AFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVES
MEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRL
ASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKG
QSEECLLIRVRGI*
back to top

mRNA from alignment at H-elongata_contig84174:159..1646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84174.16031.1 ID=mRNA_H-elongata_contig84174.16031.1|Name=mRNA_H-elongata_contig84174.16031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1488bp|location=Sequence derived from alignment at H-elongata_contig84174:159..1646+ (Himanthalia elongata Himel1 dioecious)
GTGTACGACGACCAATATCAAGGCTCGCTGTGCGAAATATGGCACGTCGT CGTGCAGGCGCGGCTGCGGATGGACGTTCACGCTCTCCTGGGGCAGCAAA GCCCGACTGATCTAATTGTGCGAGGTGACCGCTACAGTCGCAAGGTCAGG GCGTTCTCGTCGGCGCCCGCTGAAGTGGCGTTTGAGCCTGACAGCACGTT TCAACTGGTCCCAGGGGCTTATAATCGGTGAGGGGAGGAAGTCAAGTTTG CCTTGGATACGCGATACGGTTTTTAGCTCAGTACTCGTATGATGTCGAGG AAACGCATGGTACGAGGTGCAAGCTAACCAGTGCGATGCCTTTGAAACTG AGCGAGCTTGCGGAAGGCTTCAGTTTCCTGTGATAGTGCGACTAATGTTT AGCGTCGAAATTTAATTGTGAGGTGTATCAGAATCTCAGCCTTTGCATAA GGGGCAGCACCACGTACGGTTGAAGCAATTATCACAATATTTTCTCCATC GTGAATTGATCGCATACAGCATCGATGTCCAATTCAGCTTTTTAAGAAAC GAAGTACAGTCAGAACTGCAAAACGATCTCCGTCGCTTATTTGCCCCGCG GTGATAATTGTTTAGGGTGGAGATGAGATTTCAGCCGCTCTCAATTGGCA GTCGAAGAATACATGTTCACATTGTTGACGTCGAATCGATGGAAATTGTG GGTGCGTGGCTAGCCACGGCCACGGCCATGCCTCCTGTAGTCACAAAGTC GTACGAGGTCGACCTTCCCCTCGGCCGCGCTTGTCACAAGCGGATCGCTT ACTCGAACTCCTGGAGCTCAACAAAACTGTTCCGACTGGCCTCGAGCAAT CCAAGCATTCTTCGACCGCGCTATGAGAGTCTCGAGGTCAGATGAACAGC TTTGAAATACTTCGGGTGATTTTTGTCACTCCTTTTAAGGTACCTCCTAA TAATCTTGAAGGGATCGTGCTCAAAGTCTAGTAGACGGATAACGATAATA TCGCCTGGAGGAAGCCGAACCAACAGCCATTTGCATACACGACCAACATC ATTATCGAGCTTGTTACCTTCATGCACCCGCGGCAGGCGTGTACCGCGCA AAGTGGTATGCGGCCCGCTCCAAGATGAACACCGTTGAAATGAGCTACCC CAAAGCATTTATACCCAAAGAGAGTGCCCTGAAATCTATCTTGATTTGTT TGGCTGTCGAAGACGGAAGGGTGTATCGACGTTTCAGTAGCGCTGATTCC AAACGATAGGAAAATAATCGCATCATGTTGTGTATATTTCTCTGGTTTTA TGCCACAGTGACATTTCCTCGCGGTTGATCTATTTTTGATACAGGTGGCG GGCAATGGGACGGGGTACTTTAGGCTATGGTTTGCGGCCCTTGGAGAAAT CAGCACGCGAAAGGAGGCATTTTTATTCGTCAACGACATCAAGGGACAGA GCGAGGAGTGCCTGCTTATTCGCGTACGAGGGATTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig84174:159..1646+

>mRNA_H-elongata_contig84174.16031.1 ID=mRNA_H-elongata_contig84174.16031.1|Name=mRNA_H-elongata_contig84174.16031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig84174:159..1646+ (Himanthalia elongata Himel1 dioecious)
GTGTACGACGACCAATATCAAGGCTCGCTGTGCGAAATATGGCACGTCGT
CGTGCAGGCGCGGCTGCGGATGGACGTTCACGCTCTCCTGGGGCAGCAAA
GCCCGACTGATCTAATTGTGCGAGGTGACCGCTACAGTCGCAAGGTCAGG
GCGTTCTCGTCGGCGCCCGCTGAAGTGGCGTTTGAGCCTGACAGCACGTT
TCAACTGGTCCCAGGGGCTTATAATCGGTGTACGACGACCAATATCAAGG
CTCGCTGTGCGAAATATGGCACGTCGTCGTGCAGGCGCGGCTGCGGATGG
ACGTTCACGCTCTCCTGGGGCAGCAAAGCCCGACTGATCTAATTGTGCGA
GGTGACCGCTACAGTCGCAAGGTCAGGGCGTTCTCGTCGGCGCCCGCTGA
AGTGGCGTTTGAGCCTGACAGCACGTTTCAACTGGTCCCAGGGGCTTATA
ATCGGGTGGAGATGAGATTTCAGCCGCTCTCAATTGGCAGTCGAAGAATA
CATGTTCACATTGTTGACGTCGAATCGATGGAAATTGTGGGTGCGTGGCT
AGCCACGGCCACGGCCATGCCTCCTGTAGTCACAAAGTCGTACGAGGTCG
ACCTTCCCCTCGGCCGCGCTTGTCACAAGCGGATCGCTTACTCGAACTCC
TGGAGCTCAACAAAACTGTTCCGACTGGCCTCGAGCAATCCAAGCATTCT
TCGACCGCGCTATGAGAGTCTCGAGGGTGGAGATGAGATTTCAGCCGCTC
TCAATTGGCAGTCGAAGAATACATGTTCACATTGTTGACGTCGAATCGAT
GGAAATTGTGGGTGCGTGGCTAGCCACGGCCACGGCCATGCCTCCTGTAG
TCACAAAGTCGTACGAGGTCGACCTTCCCCTCGGCCGCGCTTGTCACAAG
CGGATCGCTTACTCGAACTCCTGGAGCTCAACAAAACTGTTCCGACTGGC
CTCGAGCAATCCAAGCATTCTTCGACCGCGCTATGAGAGTCTCGAGGTGG
CGGGCAATGGGACGGGGTACTTTAGGCTATGGTTTGCGGCCCTTGGAGAA
ATCAGCACGCGAAAGGAGGCATTTTTATTCGTCAACGACATCAAGGGACA
GAGCGAGGAGTGCCTGCTTATTCGCGTACGAGGGATTTAGGTGGCGGGCA
ATGGGACGGGGTACTTTAGGCTATGGTTTGCGGCCCTTGGAGAAATCAGC
ACGCGAAAGGAGGCATTTTTATTCGTCAACGACATCAAGGGACAGAGCGA
GGAGTGCCTGCTTATTCGCGTACGAGGGATTTAG
back to top