mRNA_H-elongata_contig84150.16028.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A6H5K1D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D9_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.330e-49 Identity = 90/145 (62.07%), Postives = 100/145 (68.97%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEA 435
+VTA LME FL RH+P V+VV++HS+TNIFRYDDNIRFVK ELLP L AER++ AE +G WQ DMMHITMSFADGSPARISSI AALR F+PSFIHIWELKTFWHEK ICEDDV
Sbjct: 400 EVTAVLMEAFLKRHFPSVRVVRVHSDTNIFRYDDNIRFVKTELLPLLNAERSQMAEKYGEDWQ-----------------------------DMMHITMSFADGSPARISSINAALRHFKPSFIHIWELKTFWHEKAICEDDVHT 515
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: D7G3E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E7_ECTSI) HSP 1 Score: 177 bits (449), Expect = 7.610e-49 Identity = 91/145 (62.76%), Postives = 101/145 (69.66%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEA 435
+VTA LME FL RH+P V+VV++HS+TNIFRYDDNIRFVK ELLP L AER++ AE +G WQ DMMHITMSFADGSPARISSI AALR F+PSFIHIWELKTFWHEK ICEDDVE
Sbjct: 396 EVTAVLMEAFLKRHFPTVRVVRVHSDTNIFRYDDNIRFVKTELLPLLNAERSQMAEKYGEDWQ-----------------------------DMMHITMSFADGSPARISSINAALRHFKPSFIHIWELKTFWHEKAICEDDVEV 511
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: W7U454_9STRA (Cytidine deaminase-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U454_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.500e-36 Identity = 72/147 (48.98%), Postives = 94/147 (63.95%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEARA 441
Q TA L+E+++ R+YPDV+VV++HS TNIFRYD+NI FVK ELLP +E R+ AE G++W+ + +T+SFADGSPARIS+I AALRP+RPSF+H WELKTFWH +C +DVE A
Sbjct: 444 QGTAALLEEWMQRNYPDVRVVRVHSTTNIFRYDENIAFVKNELLPLIEHYRDGAAERWGTSWRHKY-----------------------------RLTISFADGSPARISAINAALRPYRPSFMHTWELKTFWHHAKMCLEDVEVLA 561
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A7S4HMI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HMI9_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.720e-33 Identity = 72/161 (44.72%), Postives = 97/161 (60.25%), Query Frame = 1
Query: 10 ATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGG------IKHHPP----------ADVPF-LQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEARA 441
A LME F+N YPDV VV++HS TNIFRYD+NI F KREL P ++A R+ A G + S GG + PP AD P LQ ++ + +T+SFADGSPAR +I+ +LRP+RP++ H W+LKTFWH+ +C+DDVE +
Sbjct: 679 AELMEAFINALYPDVTVVRIHSKTNIFRYDENISFAKRELSPCVDAYRD--AHARGEPYPDEISGGGSWVAPAVAGRPPLAGAGTAIANADTPSNLQRNPFNPDWKQTFSVTLSFADGSPARTHAIQTSLRPYRPAYFHFWQLKTFWHDTKMCDDDVEVHS 837
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A7R9UFD1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD1_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.730e-32 Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEA 435
+V A L F+ R PDV++++LHS TNI+RY +NI FVK ELLP L R+ +A GS+W R+ M +T+SFADGSPAR+++I AALRP++PSF+HIW+L+TFWH + IC DDVE
Sbjct: 405 EVAAMLASLFIQRLCPDVKIIRLHSKTNIYRYTENIGFVKFELLPLLAEFRDAQAARWGSSW-----------------------------REKMRVTVSFADGSPARVAAINAALRPYKPSFMHIWQLQTFWHARRICLDDVEV 520
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A7S2WW95_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW95_9STRA) HSP 1 Score: 129 bits (324), Expect = 4.660e-32 Identity = 66/139 (47.48%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 16 LMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVE 432
L+E +L HYP + V ++HS+TN+FRYD+NI FVKRELLP +E R+ A GSAW RD +T+SFA GSPARI++I++ALRP+RP F+H+W+LKTFWHE IC DD+E
Sbjct: 160 LLEMWLLTHYPGITVRRVHSDTNLFRYDENIAFVKRELLPEIEPIRDALACKLGSAW-----------------------------RDNFKLTVSFASGSPARITAIQSALRPYRPMFMHMWQLKTFWHESTICLDDIE 269
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A7S2ES86_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ES86_9STRA) HSP 1 Score: 129 bits (324), Expect = 6.320e-32 Identity = 66/160 (41.25%), Postives = 93/160 (58.13%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAE-------------IHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVEARA 441
Q A LME F+ YPDV VV++HS+TNIFRYD+NI FVKREL+P ++A R+ A + V P D + ++ + +T+SFADGSPAR +I+A+LRP++P++ H W+LKTFWHE IC+DD+E +
Sbjct: 111 QALAELMEMFITALYPDVTVVRVHSDTNIFRYDENISFVKRELMPVIDAYRDAHARNEAYPDEKEEIQLLEDKEMVVXXXXXXXXXXNPFDPDWKKSFA----------VTLSFADGSPARTHAIQASLRPYKPTYFHFWQLKTFWHESKICDDDIEVHS 260
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A3R6YSY2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YSY2_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.900e-31 Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVE 432
+ TA LM KF++ +YP++ V ++HS +NIFRYDDN++F+ R+L P LEA R+ G W+ F H+T+++ADG PAR+S++ AALR ++PS++H+W+LKTFWHEK + DDV+
Sbjct: 196 EYTAALMSKFVSAYYPNIHVTQIHSGSNIFRYDDNVQFMTRQLRPVLEAHRDLLVTKVGDHWKSHF-----------------------------HLTIAYADGPPARLSALNAALRVYQPSYLHVWQLKTFWHEKKLSLDDVD 310
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A3R6WR11_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WR11_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.230e-30 Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVE 432
+ TA LM KF++ +YP++ V ++HS +NIFRYDDN++F+ R+L P LEA R+ G W+ F H+T+++ADG PAR+S++ AALR ++PS++H+W+LKTFWHEK + DDV+
Sbjct: 196 EYTAALMSKFVSAYYPNIHVTQIHSGSNIFRYDDNVQFMTRQLRPVLEAHRDLLVTKVGDHWKSHF-----------------------------HLTIAYADGPPARLSALNAALRVYQPSYLHVWQLKTFWHEKKLSLDDVD 310
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Match: A0A397CZQ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CZQ9_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.370e-30 Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 1 QVTATLMEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEIHGSAWQVSFSFGGIKHHPPADVPFLQNLSWSELARDMMHITMSFADGSPARISSIKAALRPFRPSFIHIWELKTFWHEKIICEDDVE 432
+ TA LM KF++ +YP++ V ++HS +NIFRYDDN++F+ R+L P LEA R+ G W+ F H+T+++ADG PAR+S++ AALR ++PS++H+W+LKTFWHEK + DDV+
Sbjct: 196 EYTAALMSKFVSAYYPNIHVTQIHSGSNIFRYDDNVQFMTRQLRPVLEAHRDLLVTKVGDHWKSHF-----------------------------HLTIAYADGPPARLSALNAALRVYQPSYLHVWQLKTFWHEKKLSLDDVD 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84150.16028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84150.16028.1 >prot_H-elongata_contig84150.16028.1 ID=prot_H-elongata_contig84150.16028.1|Name=mRNA_H-elongata_contig84150.16028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp MEKFLNRHYPDVQVVKLHSNTNIFRYDDNIRFVKRELLPFLEAERNRRAEback to top mRNA from alignment at H-elongata_contig84150:1537..2731+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84150.16028.1 ID=mRNA_H-elongata_contig84150.16028.1|Name=mRNA_H-elongata_contig84150.16028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1195bp|location=Sequence derived from alignment at H-elongata_contig84150:1537..2731+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84150:1537..2731+ >mRNA_H-elongata_contig84150.16028.1 ID=mRNA_H-elongata_contig84150.16028.1|Name=mRNA_H-elongata_contig84150.16028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig84150:1537..2731+ (Himanthalia elongata Himel1 dioecious)back to top |