mRNA_H-elongata_contig84133.16024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84133.16024.1
Unique NamemRNA_H-elongata_contig84133.16024.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: D8LER9_ECTSI (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER9_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 5.590e-53
Identity = 98/138 (71.01%), Postives = 110/138 (79.71%), Query Frame = 1
Query:    1 KDVVDDPFFDTEAESPAGARRTKEQTERDAQTADLGSDDSFPDA--GEVKESLFDQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSG-DSGGFLKLVTRADEPNRHAIVGVQII 405
            +DVVDDPFF  EAES +GA+RT EQ ++  QTA LGSDDS  DA  G   ESLF++V  APLTLWTIPEISSVGLTEEQ    GM+KA +GGS+VTGYAYFKDIARGRLSG D+ GFLKLV RAD P RH +VGVQII
Sbjct:  261 EDVVDDPFFAAEAESASGAQRTSEQLQQYEQTAMLGSDDSMADAAGGAEGESLFERVAGAPLTLWTIPEISSVGLTEEQAFAEGMRKASQGGSMVTGYAYFKDIARGRLSGGDAAGFLKLVARADGPTRHVVVGVQII 398          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.760e-51
Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 1
Query:    1 KDVVDDPFFDTEAESPAGARRTKEQTERDAQTADLGSDDSFPDA-GEVK-ESLFDQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSG-DSGGFLKLVTRADEPNRHAIVGVQIIGE 411
            +DVVDDPFF  EAES +GA+RT EQ ++  QTA LGSDDS  DA G  + ESLF +V  APLTLWTIPEISS GLTEEQ +  GM+KA +GGS+VTGYAYFKDIARGRLSG D+ GFLKLV RAD P RH +VGVQIIGE
Sbjct:  435 EDVVDDPFFAAEAESASGAQRTSEQLQQYEQTAMLGSDDSMADAAGRAEGESLFKRVAGAPLTLWTIPEISSAGLTEEQAVAEGMRKASQGGSMVTGYAYFKDIARGRLSGGDAAGFLKLVARADGPTRHVVVGVQIIGE 574          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A836CA28_9STRA (Soluble pyridine nucleotide transhydogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA28_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.790e-23
Identity = 66/149 (44.30%), Postives = 85/149 (57.05%), Query Frame = 1
Query:    1 KDVVDDPFFDTEAESPAGARRTK--EQTERDAQTADLGSDDSFPDAGE---VKESLFDQVVAA--PLTLWTIPEISSVGLTEEQCLEGGMKKAIEGG-----SLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
            +D +DDPFF + A +P   R  +  E            +    PD GE      +LF     A  PLTLWTIPEI+ VGL+EE   E  +   + GG     ++V GYAYFKD+ARGRLSGD  GFLK++ RA+ P RH +VGV I+GE
Sbjct:  252 EDAIDDPFFASAAPAPPPPRTAEAPESXXXXXXXXXXAAAAEKPD-GEGDGTGRTLFGTAARAGTPLTLWTIPEIACVGLSEEAARELEVAGRLGGGGGGDATVVVGYAYFKDLARGRLSGDPEGFLKIIARAEAPARHVVVGVHIMGE 399          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: K8Z8R3_NANGC (Soluble pyridine nucleotide transhydrogenase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z8R3_NANGC)

HSP 1 Score: 92.0 bits (227), Expect = 1.850e-20
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  172 APLTLWTIPEISSVGLTEEQCLEGGMKKAI---EGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRAD----EPNRHAIVGVQIIGE 411
            APLTLWT+PEI+S G++ E+ L  G + A    +GG +V GYA+FKD+ARGRLSGD  GFLK++ RA+    +  RH I+GV I+G+
Sbjct:   45 APLTLWTVPEIASSGMSTEEALARGERLAETEEQGGGIVFGYAFFKDLARGRLSGDLNGFLKIIARAEGGSGQKMRHTIIGVHIVGD 131          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.180e-19
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  172 APLTLWTIPEISSVGLTEEQCLEGGMKKAI---EGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRAD----EPNRHAIVGVQIIGE 411
            APLTLWT+PEI+S G++ E+ L  G + A    +GG +V GYA+FKD+ARGRLSGD  GFLK++ RA+    +  RH I+GV I+G+
Sbjct:  520 APLTLWTVPEIASSGMSTEEALARGERLAETEEQGGGIVFGYAFFKDLARGRLSGDLNGFLKIIARAEGGSGQKMRHTIIGVHIVGD 606          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: H6WB84_VAULI (Soluble pyridine nucleotide transhydogenase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB84_VAULI)

HSP 1 Score: 82.0 bits (201), Expect = 1.380e-15
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  175 PLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
            PLTLWT+PE++ VGL+E      G       G  V GYAYFKD+ARGR SG+ GGFLK++   D+  +H + GV ++GE
Sbjct:  320 PLTLWTVPEVAGVGLSE------GEIPYESKGKYVIGYAYFKDLARGRFSGEDGGFLKIIASVDKIGQHVVKGVHVMGE 392          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.070e-12
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  175 PLTLWTIPEISSVG--LTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
            PLTLWTIPEI+SVG  L   Q  + G K     G +V G  +FKD ARGRLSG+  GF+K+  +    N H I+G  I GE
Sbjct:  455 PLTLWTIPEIASVGTGLDASQAPQRGAKV----GDIVCGRGFFKDCARGRLSGEVNGFVKVAAKITSSNTHEIIGCCIFGE 531          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL)

HSP 1 Score: 71.2 bits (173), Expect = 9.700e-12
Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   88 AQTADLGSDDSFPDAGEVKESLFDQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLV---TRADEPNR---HAIVGVQIIG 408
            A+ A+L S   F  +G    S   Q    PLTLWTIPEI+SVG++ EQ    G     +GG+++ GYA F ++ARGRL+G  G F+++V   T A +  +   H IVGV IIG
Sbjct:  538 AEQAELQSSALFGTSGASSAS-GGQSADVPLTLWTIPEIASVGVSVEQLEAQGETGWEDGGNIIVGYARFDELARGRLAGGQG-FVQIVAMHTPAKDGQKAATHRIVGVHIIG 648          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.040e-10
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  139 VKESLF-----DQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSG-GFLKLV 354
            V E LF     +++ +AP TLWT+PEIS+VGL+ EQ  E        GG +V G AY++D ARGRLSGD+  GFL+LV
Sbjct:  449 VAEQLFQKAFDEELSSAPTTLWTMPEISTVGLSPEQAEE-----MYPGGRVVQGTAYYRDSARGRLSGDADDGFLQLV 521          
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: UPI0019F9065D (Si-specific NAD(P)(+) transhydrogenase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F9065D)

HSP 1 Score: 64.3 bits (155), Expect = 2.360e-9
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  157 DQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
            D V   P  ++TIPEIS VG TEE+  E G+   +       G A+F+++ARG +SGD  G LKL+  +   N H ++GV IIGE
Sbjct:  341 DNVGLMPFGIYTIPEISMVGATEEELTEKGVPYEV-------GTAFFEEVARGLISGDLHGMLKLIFNS---NDHTLLGVHIIGE 415          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER9_ECTSI5.590e-5371.01Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
A0A6H5L0D3_9PHAE3.760e-5170.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA28_9STRA6.790e-2344.30Soluble pyridine nucleotide transhydogenase n=1 Ta... [more]
K8Z8R3_NANGC1.850e-2052.87Soluble pyridine nucleotide transhydrogenase n=2 T... [more]
A0A4D9CSA5_9STRA5.180e-1952.87Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
H6WB84_VAULI1.380e-1549.37Soluble pyridine nucleotide transhydogenase n=1 Ta... [more]
A0A7S2Y1R6_9STRA5.070e-1249.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U8N6N8_9EUGL9.700e-1243.36Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7R9U251_9STRA7.040e-1051.28Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI0019F9065D2.360e-943.53Si-specific NAD(P)(+) transhydrogenase n=1 Tax=Pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84133contigH-elongata_contig84133:186..1503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue4.8e-43
Seed eggNOG ortholog2880.D8LER9
EggNOG free text desc.glutathione-disulfide reductase activity
EggNOG OGsCOG1249@1,KOG0405@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.342946-CDS-H-elongata_contig84133:185..3211622931246.342946-CDS-H-elongata_contig84133:185..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84133 186..321 -
1691679758.0456486-CDS-H-elongata_contig84133:185..3211691679758.0456486-CDS-H-elongata_contig84133:185..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84133 186..321 -
1622931246.361808-CDS-H-elongata_contig84133:1228..15031622931246.361808-CDS-H-elongata_contig84133:1228..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84133 1229..1503 -
1691679758.067273-CDS-H-elongata_contig84133:1228..15031691679758.067273-CDS-H-elongata_contig84133:1228..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84133 1229..1503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84133.16024.1prot_H-elongata_contig84133.16024.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84133 186..1503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84133.16024.1

>prot_H-elongata_contig84133.16024.1 ID=prot_H-elongata_contig84133.16024.1|Name=mRNA_H-elongata_contig84133.16024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
KDVVDDPFFDTEAESPAGARRTKEQTERDAQTADLGSDDSFPDAGEVKES
LFDQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFK
DIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE
back to top

mRNA from alignment at H-elongata_contig84133:186..1503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84133.16024.1 ID=mRNA_H-elongata_contig84133.16024.1|Name=mRNA_H-elongata_contig84133.16024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1318bp|location=Sequence derived from alignment at H-elongata_contig84133:186..1503- (Himanthalia elongata Himel1 dioecious)
AAGGACGTCGTTGACGACCCTTTCTTCGACACAGAAGCGGAATCACCCGC AGGCGCGCGCCGCACGAAGGAGCAGACTGAGCGGGACGCGCAGACCGCGG ACCTGGGATCCGACGACTCCTTTCCGGACGCCGGCGAGGTGAAGGAGTCC CTCTTCGATCAAGTCGTGGCGGCACCGTTGACGCTATGGACGATCCCAGA AATTTCCAGCGTGGGACTGACTGAGGAGCAGTGCTTGGAAGGAGGGATGA AGAAAGCCATCGAAGGGGGTTCTTTGTGAGCCACATTTCTGTCCCCCCTT CCTAACCGGCTCCTCCCGTACCGAACTCTCTCTGTGGTTCTCGCTAGACT ATCCTCACCTTTTCAAAAGTCTGATGCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCTTCTTTTGTTTTCCCCCAACCTTCCCCCCC CCTTTTAAAATGTTTTGCCCCCCCCCCCCCCCCCCGCCTCCCCGCGTGGC TCGTTTGACTTCATTGCGCACGCTGTATCTGCTGTGCTGTCCAGTGTGCC TTCCGATGTGATACTCTTAGCTTGCGGCTTTGGCCGCCCACGAAGCGTTC TTTCATCAATACTCATACTTAGAATATACACCAGTTATATCTCCAATGTG TTATGGGATCACAAGAGCGAGGCTAGCTCCCTGCCCCCTACTTCCCCTTG CCCCATTCCCTTGAAAAAGCTAGCACGAAAAGTGCAAGGGTGGTTGTTTA TTATACTGGGTGACTGTATGTAGGGGGGCAAGGTCAAAAAGGCCTTCAAG GCATAGATTGCGCGGTCGACGACACGCTCTGCCCCCCCCCTCCCCCCTCA CTCACGAGAGAATGAGGCCGGGCGTGTGTGTATTTATTAAATTGCACAAA ACCGCGCAATCCGGCCCTGTCATGCTACGTAGTAATTCTAGGCTACACGC ATTGACAGTGTTGATCCTTGTGTGTACGTGTGTATTCATTAAATTGCACA CAACCGCACAACCCGACCCTGTTAAGCTAGTCATGCATGTGTGTCTATGT GTGTTTTTGCGAGTGTTGTGTGCGAATCGAGGGGAGAGGGCTGACGTTGA GCTCGGGGGTAGATAGCATCGCCTTGGTCGTGTGTAACGGAATGCGGGCG TCGGCGCTGCGCGTGGTTGTGGCATTTGCAAGGGTCACTGGGTATGCATA TTTCAAGGACATTGCGAGAGGGAGGCTGAGTGGCGACAGCGGGGGCTTCC TCAAGCTCGTCACCAGGGCTGACGAGCCCAATCGACACGCAATTGTCGGG GTGCAGATCATCGGTGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig84133:186..1503-

>mRNA_H-elongata_contig84133.16024.1 ID=mRNA_H-elongata_contig84133.16024.1|Name=mRNA_H-elongata_contig84133.16024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig84133:186..1503- (Himanthalia elongata Himel1 dioecious)
AAGGACGTCGTTGACGACCCTTTCTTCGACACAGAAGCGGAATCACCCGC
AGGCGCGCGCCGCACGAAGGAGCAGACTGAGCGGGACGCGCAGACCGCGG
ACCTGGGATCCGACGACTCCTTTCCGGACGCCGGCGAGGTGAAGGAGTCC
CTCTTCGATCAAGTCGTGGCGGCACCGTTGACGCTATGGACGATCCCAGA
AATTTCCAGCGTGGGACTGACTGAGGAGCAGTGCTTGGAAGGAGGGATGA
AGAAAGCCATCGAAGGGGGTTCTTTAAGGACGTCGTTGACGACCCTTTCT
TCGACACAGAAGCGGAATCACCCGCAGGCGCGCGCCGCACGAAGGAGCAG
ACTGAGCGGGACGCGCAGACCGCGGACCTGGGATCCGACGACTCCTTTCC
GGACGCCGGCGAGGTGAAGGAGTCCCTCTTCGATCAAGTCGTGGCGGCAC
CGTTGACGCTATGGACGATCCCAGAAATTTCCAGCGTGGGACTGACTGAG
GAGCAGTGCTTGGAAGGAGGGATGAAGAAAGCCATCGAAGGGGGTTCTTT
GGTCACTGGGTATGCATATTTCAAGGACATTGCGAGAGGGAGGCTGAGTG
GCGACAGCGGGGGCTTCCTCAAGCTCGTCACCAGGGCTGACGAGCCCAAT
CGACACGCAATTGTCGGGGTGCAGATCATCGGTGAGGGTCACTGGGTATG
CATATTTCAAGGACATTGCGAGAGGGAGGCTGAGTGGCGACAGCGGGGGC
TTCCTCAAGCTCGTCACCAGGGCTGACGAGCCCAATCGACACGCAATTGT
CGGGGTGCAGATCATCGGTGAG
back to top