prot_H-elongata_contig84131.16023.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig84131.16023.1
Unique Nameprot_H-elongata_contig84131.16023.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
[Close]
BLAST of mRNA_H-elongata_contig84131.16023.1 vs. uniprot
Match: A0A6H5JXD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.830e-15
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0 
Query:    1 RYPSILARVIWGSDLRRERETRLAAVGSLKASPSPQGPMPAWYRKLETLSCPEG 54
            R  SIL RVIWGSDLRRERE+RL AVGS KASP P GP P+W+ KLET S P G
Sbjct: 1707 RRRSILGRVIWGSDLRRERESRLVAVGSAKASPRPAGPEPSWHVKLETSSHPGG 1760
[Close]
BLAST of mRNA_H-elongata_contig84131.16023.1 vs. uniprot
Match: D8LHQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.140e-13
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0 
Query:    1 RYPSILARVIWGSDLRRERETRLAAVGSLKASPSPQGPMPAWYRKLETLSCPEG 54
            R  SIL RVIWGSDLRRERE+RL AVGS KASP P  P P W+ KLE  S P G
Sbjct: 1657 RRRSILGRVIWGSDLRRERESRLVAVGSGKASPRPASPEPGWHVKLEASSHPGG 1710
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84131.16023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXD9_9PHAE3.830e-1572.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ6_ECTSI4.140e-1368.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84131contigH-elongata_contig84131:1038..1923 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84131.16023.1mRNA_H-elongata_contig84131.16023.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig84131 1038..1923 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig84131.16023.1 ID=prot_H-elongata_contig84131.16023.1|Name=mRNA_H-elongata_contig84131.16023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RYPSILARVIWGSDLRRERETRLAAVGSLKASPSPQGPMPAWYRKLETLS
CPEG
back to top